Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GFC28_RS08700 Genome accession   NZ_CP015435
Coordinates   1799288..1801102 (-) Length   604 a.a.
NCBI ID   WP_044745742.1    Uniprot ID   A0A160F7Q2
Organism   Anoxybacillus sp. B2M1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1794288..1806102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC28_RS08665 (GFC28_1786) - 1795025..1795663 (-) 639 WP_044745749.1 GTP pyrophosphokinase family protein -
  GFC28_RS08670 (GFC28_1787) - 1795681..1796055 (-) 375 WP_044745748.1 hypothetical protein -
  GFC28_RS08675 (GFC28_1788) - 1796190..1796780 (+) 591 WP_044745747.1 CYTH domain-containing protein -
  GFC28_RS08680 (GFC28_1789) - 1796777..1797397 (+) 621 WP_044745746.1 lytic transglycosylase domain-containing protein -
  GFC28_RS08685 (GFC28_1790) - 1797499..1797909 (+) 411 WP_044745745.1 globin -
  GFC28_RS08690 (GFC28_1791) - 1797923..1798789 (+) 867 WP_231734619.1 ClpXP adapter SpxH family protein -
  GFC28_RS08695 (GFC28_1792) - 1799076..1799267 (+) 192 WP_044745743.1 hypothetical protein -
  GFC28_RS08700 (GFC28_1793) pepF 1799288..1801102 (-) 1815 WP_044745742.1 oligoendopeptidase F Regulator
  GFC28_RS08705 (GFC28_1794) - 1801158..1802372 (-) 1215 WP_044745768.1 competence protein CoiA family protein -
  GFC28_RS08710 (GFC28_1795) cls 1802651..1804162 (-) 1512 WP_044745741.1 cardiolipin synthase -
  GFC28_RS08715 (GFC28_1796) mecA 1804229..1804900 (-) 672 WP_044745740.1 adaptor protein MecA -
  GFC28_RS08720 (GFC28_1797) - 1805096..1805764 (+) 669 WP_044745739.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69813.70 Da        Isoelectric Point: 4.9985

>NTDB_id=179668 GFC28_RS08700 WP_044745742.1 1799288..1801102(-) (pepF) [Anoxybacillus sp. B2M1]
MTEKQAVKSLPKRNEIPIEETWRLEDIFPSDEAWEQEFQEVKKMLPQLADYQGRLGESADVFYEALQYQDHLSLRLDKLY
TYAHMRYDQDTTNSFYQSLNDRIKGLYSEASSAMAFIVPEILAIDEAKVKSFLKEKEELKLYEHALDEINRQRPHVLSAK
EEALLAQAAEVMASSSNTFGMLNNADLKFPTIIDENGEEVEVTHGRYIRFLESEDRRVRRDAFKAVYKTYGKYKNTFAST
LSGAVKKDNFFARVRQYQSARQAALSSNNIPESVYDNLVETVNKNLDLLHRYVRLRKKALGIEELHMYDLYTPLVKNVKM
EVTYEEAKQYLLKGLAPLGEEYVSIVKEGLENRWVDVRENAGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGSYSIFVAEVASTCNEALLNDYLLKTIEEEDKRLYLLNHYLEGFRGTVFRQTMFAEFEHMVHVKAQ
QGEALTAESLTSMYYELNKKYFGSDVVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVQRYVEFL
KAGSSDYPIEVLKKAGVDMATAKPIEEACQVFEQKLEEMEQLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=179668 GFC28_RS08700 WP_044745742.1 1799288..1801102(-) (pepF) [Anoxybacillus sp. B2M1]
ATGACTGAAAAGCAAGCGGTAAAATCATTGCCAAAGCGCAATGAAATTCCTATCGAGGAAACGTGGCGGCTTGAAGATAT
TTTTCCAAGCGATGAGGCATGGGAGCAAGAATTTCAAGAAGTCAAAAAAATGCTGCCCCAGCTCGCTGATTATCAAGGGC
GTCTAGGAGAATCCGCCGATGTTTTCTATGAGGCGCTGCAATATCAGGATCATTTGTCGCTGCGTCTTGACAAGCTGTAT
ACGTATGCGCATATGCGCTACGACCAAGATACCACCAACTCTTTTTACCAAAGCTTAAATGATCGGATTAAGGGGCTTTA
CAGCGAAGCATCAAGCGCAATGGCTTTTATCGTGCCAGAAATTTTGGCGATTGATGAGGCGAAAGTGAAGTCATTTCTTA
AGGAAAAAGAGGAACTTAAGCTTTATGAACATGCTTTAGATGAAATTAACCGACAGCGGCCGCATGTGCTGAGCGCAAAA
GAAGAGGCGTTGCTTGCTCAAGCGGCGGAGGTGATGGCCTCATCAAGCAATACATTTGGGATGCTAAATAACGCCGATTT
AAAATTCCCGACCATTATTGACGAAAATGGGGAAGAAGTTGAAGTGACGCACGGACGTTACATACGCTTTCTTGAAAGTG
AAGATCGCCGCGTTCGCCGTGATGCGTTTAAAGCTGTGTATAAAACATACGGAAAATATAAAAACACTTTTGCCAGCACG
CTTAGTGGCGCAGTGAAAAAAGATAACTTTTTTGCCCGCGTGCGCCAGTATCAATCTGCGCGTCAAGCGGCTTTAAGCAG
CAATAATATTCCGGAGAGCGTTTATGATAATCTTGTGGAGACTGTAAATAAAAATTTGGATTTGCTGCACCGATATGTTC
GATTGCGCAAAAAAGCTCTAGGGATTGAGGAACTTCATATGTACGATTTGTATACTCCTCTGGTGAAAAATGTAAAAATG
GAAGTGACATATGAAGAAGCAAAGCAGTATCTACTAAAAGGACTAGCTCCACTTGGCGAAGAATATGTAAGCATCGTGAA
AGAAGGACTGGAAAATCGTTGGGTCGACGTGCGTGAAAATGCAGGAAAAAGAAGTGGAGCTTATTCTTCAGGAGCTTATG
GAACCAATCCATATATTTTGCTGAACTGGCAGGATAATGTCAATAATTTATTTACGCTTGCCCATGAGTTTGGCCATTCT
GTCCACAGCTATTATACGCGGAAAACGCAGCCATATCCATATGGCAGCTACTCGATTTTCGTGGCGGAAGTCGCTTCGAC
ATGCAATGAAGCATTGCTCAATGATTATTTGCTAAAAACGATTGAAGAGGAAGACAAGCGGTTGTATTTGCTCAATCATT
ATTTGGAAGGTTTTCGCGGCACTGTATTTCGGCAAACGATGTTTGCTGAGTTTGAGCATATGGTTCATGTAAAAGCCCAA
CAGGGAGAAGCGTTAACAGCCGAATCACTGACATCTATGTATTATGAGCTCAATAAAAAATATTTTGGAAGCGATGTGGT
TGTTGATGAGGAAATCGGTTTAGAATGGGCGCGAATTCCGCATTTTTACTACAATTATTATGTATATCAATATGCGACAG
GCTTTAGTGCGGCTACAGCGTTGAGCAAGCAAATTTTAGAAGAAGGAGAGCCGGCTGTTCAACGGTACGTTGAGTTTTTA
AAAGCCGGCAGCTCTGATTATCCGATTGAGGTGCTGAAGAAGGCTGGAGTGGATATGGCGACAGCTAAGCCAATCGAGGA
AGCGTGCCAAGTGTTCGAGCAAAAACTGGAAGAGATGGAACAACTGCTGTCGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160F7Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.986

98.013

0.48

Multiple sequence alignment