Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWI89_RS25930 Genome accession   NZ_CP019273
Coordinates   4996429..4996944 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 13P477T     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4991429..5001944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI89_RS25885 (BWI89_25870) csrA 4992149..4992334 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BWI89_RS25915 (BWI89_25900) yqaB 4993659..4994225 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BWI89_RS25920 (BWI89_25905) yqaA 4994222..4994650 (+) 429 WP_001287454.1 YqaA family protein -
  BWI89_RS25925 (BWI89_25910) gshA 4994723..4996279 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BWI89_RS25930 (BWI89_25915) luxS 4996429..4996944 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  BWI89_RS25935 (BWI89_25920) emrB 4997008..4998546 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BWI89_RS25940 (BWI89_25925) emrA 4998563..4999735 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BWI89_RS25945 (BWI89_25930) emrR 4999862..5000392 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BWI89_RS25950 (BWI89_25935) ygaH 5000483..5000818 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  BWI89_RS25955 (BWI89_25940) ygaZ 5000808..5001545 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=179636 BWI89_RS25930 WP_001130208.1 4996429..4996944(+) (luxS) [Escherichia coli strain 13P477T]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=179636 BWI89_RS25930 WP_001130208.1 4996429..4996944(+) (luxS) [Escherichia coli strain 13P477T]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737