Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI89_RS03415 Genome accession   NZ_CP019273
Coordinates   696787..697263 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain 13P477T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691787..702263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI89_RS03370 (BWI89_03360) sbmC 692273..692746 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  BWI89_RS03375 (BWI89_03365) yeeA 692944..694002 (+) 1059 WP_001200891.1 FUSC family protein -
  BWI89_RS03380 (BWI89_03370) tmaR 694174..694503 (+) 330 WP_000450409.1 DUF496 family protein -
  BWI89_RS03385 (BWI89_03375) - 694604..694786 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BWI89_RS03390 (BWI89_03380) - 694858..694986 (+) 129 Protein_635 transposase domain-containing protein -
  BWI89_RS29575 - 695275..695367 (-) 93 Protein_636 DUF957 domain-containing protein -
  BWI89_RS03395 (BWI89_03385) yeeW 695401..695595 (-) 195 WP_000988600.1 DUF5983 family protein -
  BWI89_RS03400 (BWI89_03390) cbtA 695592..695966 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BWI89_RS03405 (BWI89_03395) cbeA 696055..696423 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BWI89_RS03410 (BWI89_03400) yeeT 696497..696718 (-) 222 WP_000692346.1 DUF987 domain-containing protein -
  BWI89_RS03415 (BWI89_03405) radC 696787..697263 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  BWI89_RS03420 (BWI89_03410) - 697279..697764 (-) 486 WP_000214415.1 antirestriction protein -
  BWI89_RS03425 (BWI89_03415) - 697856..698677 (-) 822 WP_024172605.1 DUF932 domain-containing protein -
  BWI89_RS03435 (BWI89_03425) - 698898..699308 (-) 411 WP_000846713.1 hypothetical protein -
  BWI89_RS03440 (BWI89_03430) - 699324..700007 (-) 684 WP_000775500.1 hypothetical protein -
  BWI89_RS03445 (BWI89_03435) - 700143..701213 (-) 1071 WP_148119577.1 patatin-like phospholipase family protein -
  BWI89_RS03450 (BWI89_03440) - 701210..702115 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=179563 BWI89_RS03415 WP_001186725.1 696787..697263(-) (radC) [Escherichia coli strain 13P477T]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=179563 BWI89_RS03415 WP_001186725.1 696787..697263(-) (radC) [Escherichia coli strain 13P477T]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399