Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI88_RS18430 Genome accession   NZ_CP019271
Coordinates   3631558..3632034 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 13P460A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3626558..3637034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI88_RS26785 - 3627363..3627443 (-) 81 Protein_3346 hypothetical protein -
  BWI88_RS18400 (BWI88_18370) istA 3627673..3629214 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  BWI88_RS18405 (BWI88_18375) istB 3629229..3629975 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  BWI88_RS18410 (BWI88_18380) - 3630130..3630279 (-) 150 Protein_3349 DUF5983 family protein -
  BWI88_RS18415 (BWI88_18385) - 3630276..3630653 (-) 378 WP_001556084.1 TA system toxin CbtA family protein -
  BWI88_RS18420 (BWI88_18390) - 3630743..3631111 (-) 369 WP_016230789.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BWI88_RS18425 (BWI88_18400) yeeT 3631274..3631495 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  BWI88_RS18430 (BWI88_18405) radC 3631558..3632034 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  BWI88_RS18435 (BWI88_18410) - 3632050..3632523 (-) 474 WP_001765426.1 antirestriction protein -
  BWI88_RS18445 (BWI88_18420) - 3632865..3633683 (-) 819 WP_020239663.1 DUF932 domain-containing protein -
  BWI88_RS18455 (BWI88_18430) - 3633801..3633996 (-) 196 Protein_3356 DUF905 family protein -
  BWI88_RS18460 (BWI88_18435) - 3634067..3636913 (-) 2847 WP_111962961.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=179539 BWI88_RS18430 WP_001186775.1 3631558..3632034(-) (radC) [Escherichia coli strain 13P460A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=179539 BWI88_RS18430 WP_001186775.1 3631558..3632034(-) (radC) [Escherichia coli strain 13P460A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399