Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BWI88_RS18355 Genome accession   NZ_CP019271
Coordinates   3620288..3621715 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain 13P460A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3615288..3626715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI88_RS18325 (BWI88_18305) yeeZ 3615343..3616167 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BWI88_RS18330 (BWI88_18310) yeeY 3616213..3617142 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BWI88_RS18335 yoeI 3617357..3617419 (+) 63 WP_010723108.1 membrane protein YoeI -
  BWI88_RS18340 (BWI88_18315) plaP 3617409..3618767 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BWI88_RS18345 (BWI88_18320) tsuA 3618946..3620004 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  BWI88_RS18350 (BWI88_18325) tsuB 3620018..3620245 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BWI88_RS18355 (BWI88_18330) sbcB 3620288..3621715 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  BWI88_RS18360 (BWI88_18335) dacD 3621924..3623090 (+) 1167 WP_024198359.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BWI88_RS18365 (BWI88_18340) sbmC 3623209..3623682 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  BWI88_RS18370 (BWI88_18345) yeeA 3623880..3624938 (+) 1059 WP_001200895.1 FUSC family protein -
  BWI88_RS18375 (BWI88_18350) tmaR 3625110..3625439 (+) 330 WP_000450409.1 DUF496 family protein -
  BWI88_RS27075 - 3625540..3625905 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  BWI88_RS26780 - 3626176..3626565 (-) 390 WP_102804527.1 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=179538 BWI88_RS18355 WP_000980605.1 3620288..3621715(-) (sbcB) [Escherichia coli strain 13P460A]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=179538 BWI88_RS18355 WP_000980605.1 3620288..3621715(-) (sbcB) [Escherichia coli strain 13P460A]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579