Detailed information NTG0179527

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWI88_RS14655
• Genome accession: NZ_CP019271
• Coordinates: 2881208..2882200 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 13P460A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2876208..2887200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWI88_RS14625 (BWI88_14615)	ispD	2876260..2876970 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BWI88_RS14630 (BWI88_14620)	ispF	2876970..2877449 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWI88_RS14635 (BWI88_14625)	truD	2877446..2878495 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BWI88_RS14640 (BWI88_14630)	surE	2878476..2879237 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BWI88_RS14645 (BWI88_14635)	pcm	2879231..2879857 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BWI88_RS14650 (BWI88_14640)	nlpD	2880042..2881145 (+)	1104	WP_306805368.1	murein hydrolase activator NlpD	-
BWI88_RS14655 (BWI88_14645)	rpoS	2881208..2882200 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BWI88_RS14660 (BWI88_14650)	-	2882321..2882728 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
BWI88_RS14665 (BWI88_14655)	-	2882875..2883468 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BWI88_RS14670 (BWI88_14660)	-	2883468..2884895 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BWI88_RS14675 (BWI88_14665)	-	2884906..2885142 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BWI88_RS14680 (BWI88_14670)	ygbN	2885181..2886545 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=179527 BWI88_RS14655 WP_000081550.1 2881208..2882200(+) (rpoS) [Escherichia coli strain 13P460A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=179527 BWI88_RS14655 WP_000081550.1 2881208..2882200(+) (rpoS) [Escherichia coli strain 13P460A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715