Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI88_RS03785 Genome accession   NZ_CP019271
Coordinates   736515..736991 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain 13P460A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 731515..741991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI88_RS26715 - 731610..731738 (-) 129 Protein_686 DUF5983 family protein -
  BWI88_RS03750 (BWI88_03765) istA 731933..733474 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  BWI88_RS03755 (BWI88_03770) istB 733489..734235 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  BWI88_RS03760 (BWI88_03775) - 734325..734684 (-) 360 Protein_689 DUF5983 family protein -
  BWI88_RS03765 (BWI88_03780) cbtA 734669..735058 (-) 390 WP_112044915.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BWI88_RS03770 (BWI88_03785) - 735148..735516 (-) 369 WP_112044916.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BWI88_RS03775 (BWI88_03790) - 735566..736210 (-) 645 WP_059252084.1 hypothetical protein -
  BWI88_RS03780 (BWI88_03795) - 736225..736446 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  BWI88_RS03785 (BWI88_03800) radC 736515..736991 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  BWI88_RS03790 (BWI88_03805) - 737006..737491 (-) 486 WP_042631074.1 antirestriction protein -
  BWI88_RS03795 (BWI88_03810) - 737582..738400 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  BWI88_RS03805 (BWI88_03820) - 738728..741574 (-) 2847 WP_112044917.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=179484 BWI88_RS03785 WP_001186747.1 736515..736991(-) (radC) [Escherichia coli strain 13P460A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=179484 BWI88_RS03785 WP_001186747.1 736515..736991(-) (radC) [Escherichia coli strain 13P460A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAACCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment