Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AOU00_RS25010 Genome accession   NZ_CP015423
Coordinates   5600095..5601945 (+) Length   616 a.a.
NCBI ID   WP_069291937.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain J     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5595095..5606945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOU00_RS27520 - 5595254..5595376 (+) 123 WP_257785358.1 hypothetical protein -
  AOU00_RS24985 (AOU00_24965) - 5595862..5596089 (+) 228 Protein_4991 NAD(P)H-binding protein -
  AOU00_RS24990 (AOU00_24970) - 5596263..5597285 (+) 1023 WP_069291934.1 NADH:flavin oxidoreductase/NADH oxidase -
  AOU00_RS25000 (AOU00_24980) - 5597854..5598264 (+) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  AOU00_RS25005 (AOU00_24985) rcrP 5598339..5600102 (+) 1764 WP_069291936.1 ABC transporter ATP-binding protein Regulator
  AOU00_RS25010 (AOU00_24990) rcrQ 5600095..5601945 (+) 1851 WP_069291937.1 ABC transporter ATP-binding protein Regulator
  AOU00_RS25015 (AOU00_24995) - 5602064..5602372 (+) 309 WP_061830895.1 hypothetical protein -
  AOU00_RS25020 (AOU00_25000) - 5602672..5602842 (+) 171 WP_155765266.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67975.59 Da        Isoelectric Point: 6.2783

>NTDB_id=179411 AOU00_RS25010 WP_069291937.1 5600095..5601945(+) (rcrQ) [Paenibacillus polymyxa strain J]
MDKNEHTVDSQQMKMNQRGPMGKGPTGGKGTGEKANNFKKTISQLVSYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=179411 AOU00_RS25010 WP_069291937.1 5600095..5601945(+) (rcrQ) [Paenibacillus polymyxa strain J]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAAAGGACCCACGGG
GGGCAAGGGTACTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCCGATAAGCTCAGCGATATT
GCCAACCTGATTCAGGAAGGAATCGTGACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAACTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTATAGCTACGCTGATCGGATTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACTTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACTGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGATCGTATGATCATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTTAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGCACCCCGATTAGCCAATTAACGCGCGAAAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCATGTAGAGCGGTGGGTCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGATGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTACTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGATCTATACAATAGTCAGTTTGAAC
ATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529

Multiple sequence alignment