Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AOU00_RS25005 Genome accession   NZ_CP015423
Coordinates   5598339..5600102 (+) Length   587 a.a.
NCBI ID   WP_069291936.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain J     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5593339..5605102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOU00_RS27315 (AOU00_24955) - 5594050..5594400 (-) 351 WP_061830907.1 hypothetical protein -
  AOU00_RS24980 (AOU00_24960) - 5594595..5595107 (+) 513 WP_155729746.1 hypothetical protein -
  AOU00_RS27520 - 5595254..5595376 (+) 123 WP_257785358.1 hypothetical protein -
  AOU00_RS24985 (AOU00_24965) - 5595862..5596089 (+) 228 Protein_4991 NAD(P)H-binding protein -
  AOU00_RS24990 (AOU00_24970) - 5596263..5597285 (+) 1023 WP_069291934.1 NADH:flavin oxidoreductase/NADH oxidase -
  AOU00_RS25000 (AOU00_24980) - 5597854..5598264 (+) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  AOU00_RS25005 (AOU00_24985) rcrP 5598339..5600102 (+) 1764 WP_069291936.1 ABC transporter ATP-binding protein Regulator
  AOU00_RS25010 (AOU00_24990) rcrQ 5600095..5601945 (+) 1851 WP_069291937.1 ABC transporter ATP-binding protein Regulator
  AOU00_RS25015 (AOU00_24995) - 5602064..5602372 (+) 309 WP_061830895.1 hypothetical protein -
  AOU00_RS25020 (AOU00_25000) - 5602672..5602842 (+) 171 WP_155765266.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64780.09 Da        Isoelectric Point: 7.7403

>NTDB_id=179410 AOU00_RS25005 WP_069291936.1 5598339..5600102(+) (rcrP) [Paenibacillus polymyxa strain J]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAVLILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIIEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=179410 AOU00_RS25005 WP_069291936.1 5598339..5600102(+) (rcrP) [Paenibacillus polymyxa strain J]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTACTTTGCAGCCTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCTGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCTATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCTATTCTGGCCGTATGGGCTATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGTTCTGATTTTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTTCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTCGCGAACCGATTAATGACGATG
ATTGGCCCCGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTATCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATAGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCAGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTATTGTTCAA
CGGTACGGTTGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGGAGCTTCGGAGAAACTCGTTAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAGATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGCCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAAATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment