Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI87_RS02570 Genome accession   NZ_CP019267
Coordinates   488881..489549 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 13C1079T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 483881..494549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI87_RS02540 (BWI87_02560) rfaQ 484059..485117 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BWI87_RS02545 (BWI87_02565) waaA 485530..486807 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BWI87_RS02550 (BWI87_02570) coaD 486815..487294 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BWI87_RS02555 (BWI87_02575) mutM 487333..488142 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BWI87_RS02560 (BWI87_02580) rpmG 488240..488407 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BWI87_RS02565 (BWI87_02585) rpmB 488428..488664 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BWI87_RS02570 (BWI87_02590) radC 488881..489549 (-) 669 WP_001298959.1 RadC family protein Machinery gene
  BWI87_RS02575 (BWI87_02595) coaBC 489721..490941 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BWI87_RS02580 (BWI87_02600) dut 490919..491377 (+) 459 WP_000976070.1 dUTP diphosphatase -
  BWI87_RS02585 (BWI87_02605) slmA 491484..492080 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BWI87_RS02590 (BWI87_02610) pyrE 492117..492758 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  BWI87_RS02595 (BWI87_02615) rph 492824..493540 (-) 717 WP_001247093.1 ribonuclease PH -
  BWI87_RS02605 (BWI87_02625) yicC 493667..494530 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=179404 BWI87_RS02570 WP_001298959.1 488881..489549(-) (radC) [Escherichia coli strain 13C1079T]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=179404 BWI87_RS02570 WP_001298959.1 488881..489549(-) (radC) [Escherichia coli strain 13C1079T]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496