Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AOU00_RS08815 Genome accession   NZ_CP015423
Coordinates   1939821..1940774 (-) Length   317 a.a.
NCBI ID   WP_069290425.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain J     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934821..1945774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOU00_RS08790 (AOU00_08780) - 1935290..1936201 (-) 912 WP_069290422.1 aldo/keto reductase -
  AOU00_RS08795 (AOU00_08785) - 1936359..1937102 (-) 744 WP_069290423.1 alpha/beta hydrolase -
  AOU00_RS08800 (AOU00_08790) - 1937136..1938116 (-) 981 WP_069290424.1 siderophore ABC transporter substrate-binding protein -
  AOU00_RS08805 (AOU00_08795) - 1938129..1938887 (-) 759 WP_028541804.1 ABC transporter ATP-binding protein -
  AOU00_RS08810 (AOU00_08800) - 1938881..1939831 (-) 951 WP_013312013.1 iron chelate uptake ABC transporter family permease subunit -
  AOU00_RS08815 (AOU00_08805) ceuB 1939821..1940774 (-) 954 WP_069290425.1 ABC transporter permease Machinery gene
  AOU00_RS08820 (AOU00_08810) - 1941098..1941775 (+) 678 WP_069290426.1 response regulator transcription factor -
  AOU00_RS08825 (AOU00_08815) - 1941772..1942689 (+) 918 WP_069292026.1 sensor histidine kinase -
  AOU00_RS08830 (AOU00_08820) - 1942798..1943475 (+) 678 WP_069290427.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=179390 AOU00_RS08815 WP_069290425.1 1939821..1940774(-) (ceuB) [Paenibacillus polymyxa strain J]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSAVFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=179390 AOU00_RS08815 WP_069290425.1 1939821..1940774(-) (ceuB) [Paenibacillus polymyxa strain J]
ATGAAATTACGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTAATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTCGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACACTGATTTTTATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTGGTCGGTTTGATGTTTGGAGGCATCTTAAATTCGGTAACGACTTTTTTTGCCTACAAATATAATCTGATT
CAGGGCATTTCTTCGTGGATGCAAGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGCTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACTGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGTTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGGTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment