Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AOU00_RS03360 Genome accession   NZ_CP015423
Coordinates   714570..715007 (-) Length   145 a.a.
NCBI ID   WP_069289912.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain J     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 709570..720007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOU00_RS03350 (AOU00_03345) - 710877..712502 (-) 1626 WP_069289910.1 response regulator transcription factor -
  AOU00_RS03355 (AOU00_03350) - 712477..714297 (-) 1821 WP_069289911.1 sensor histidine kinase -
  AOU00_RS26510 - 714412..714564 (+) 153 WP_172828254.1 hypothetical protein -
  AOU00_RS03360 (AOU00_03355) nucA/comI 714570..715007 (-) 438 WP_069289912.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AOU00_RS03365 (AOU00_03360) - 715577..715879 (+) 303 WP_069289913.1 hypothetical protein -
  AOU00_RS03370 (AOU00_03365) - 715949..717835 (-) 1887 WP_069289914.1 Ig-like domain-containing protein -
  AOU00_RS03375 (AOU00_03370) - 717955..718377 (-) 423 WP_069289915.1 hypothetical protein -
  AOU00_RS03380 (AOU00_03375) - 718394..719062 (-) 669 WP_013310967.1 uracil-DNA glycosylase -
  AOU00_RS03385 (AOU00_03380) - 719322..719984 (-) 663 WP_069289916.1 S-layer homology domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15985.18 Da        Isoelectric Point: 8.9758

>NTDB_id=179383 AOU00_RS03360 WP_069289912.1 714570..715007(-) (nucA/comI) [Paenibacillus polymyxa strain J]
MKKKLLSFIALVLLAAGAYWFEGGNLLTKMTGENPPSSAQVTLQFPSGRYPETAQHIKEAIQAGKSPVCTIDREGAEQNR
KHSLADVPTRKGYDRDEWPMAMCSEGGKGANIKYIAPKDNRGAGSWVSHQLDEYEDGTRVKFVVK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=179383 AOU00_RS03360 WP_069289912.1 714570..715007(-) (nucA/comI) [Paenibacillus polymyxa strain J]
TTGAAGAAAAAATTGCTAAGTTTTATAGCTTTAGTGCTGCTAGCTGCGGGCGCGTACTGGTTTGAAGGAGGCAATCTTCT
TACGAAAATGACAGGAGAAAACCCGCCTTCATCGGCTCAGGTTACGCTGCAATTCCCGTCAGGTCGTTACCCTGAAACAG
CGCAGCATATTAAGGAAGCCATTCAGGCGGGAAAATCACCGGTATGCACAATTGACCGTGAAGGAGCCGAGCAAAATCGC
AAGCATTCGCTTGCAGATGTTCCCACTCGTAAAGGATACGATCGTGACGAATGGCCGATGGCTATGTGCTCAGAAGGTGG
CAAAGGTGCAAATATCAAATACATAGCCCCTAAGGATAATCGTGGGGCAGGATCATGGGTCAGTCACCAATTGGATGAGT
ATGAGGATGGAACTCGTGTGAAATTTGTTGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.308

71.724

0.483

Multiple sequence alignment