Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI86_RS16615 Genome accession   NZ_CP019259
Coordinates   3218005..3218481 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain 13C1065T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3213005..3223481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI86_RS16570 (BWI86_16570) ghrA 3213138..3214076 (-) 939 WP_000351315.1 glyoxylate/hydroxypyruvate reductase GhrA -
  BWI86_RS16580 (BWI86_16580) - 3214547..3215389 (-) 843 WP_148116429.1 DUF4942 domain-containing protein -
  BWI86_RS16585 (BWI86_16585) - 3215474..3215671 (-) 198 WP_148116364.1 DUF957 domain-containing protein -
  BWI86_RS16590 (BWI86_16590) - 3215683..3216171 (-) 489 WP_089587850.1 DUF5983 family protein -
  BWI86_RS16595 (BWI86_16595) cbtA 3216168..3216545 (-) 378 WP_000854808.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BWI86_RS16600 (BWI86_16600) cbeA 3216634..3217002 (-) 369 WP_001354276.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BWI86_RS16605 (BWI86_16605) - 3217052..3217696 (-) 645 WP_148116365.1 antitoxin of toxin-antitoxin stability system -
  BWI86_RS16610 (BWI86_16610) - 3217715..3217936 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  BWI86_RS16615 (BWI86_16615) radC 3218005..3218481 (-) 477 WP_001186747.1 JAB domain-containing protein Machinery gene
  BWI86_RS16620 (BWI86_16620) - 3218496..3218981 (-) 486 WP_042631074.1 antirestriction protein -
  BWI86_RS16625 (BWI86_16625) - 3219072..3219890 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  BWI86_RS16635 (BWI86_16635) - 3220217..3223063 (-) 2847 WP_148116366.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=179375 BWI86_RS16615 WP_001186747.1 3218005..3218481(-) (radC) [Escherichia coli strain 13C1065T]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=179375 BWI86_RS16615 WP_001186747.1 3218005..3218481(-) (radC) [Escherichia coli strain 13C1065T]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment