Detailed information NTG0179350

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWI86_RS07420
• Genome accession: NZ_CP019259
• Coordinates: 1470386..1471378 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 13C1065T
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1465386..1476378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWI86_RS07390 (BWI86_07405)	ispD	1465447..1466157 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BWI86_RS07395 (BWI86_07410)	ispF	1466157..1466636 (+)	480	WP_001402449.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWI86_RS07400 (BWI86_07415)	truD	1466633..1467682 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
BWI86_RS07405 (BWI86_07420)	surE	1467663..1468424 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BWI86_RS07410 (BWI86_07425)	pcm	1468418..1469044 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BWI86_RS07415 (BWI86_07430)	nlpD	1469229..1470323 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BWI86_RS07420 (BWI86_07435)	rpoS	1470386..1471378 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BWI86_RS07425 (BWI86_07440)	ygbN	1471472..1472836 (-)	1365	WP_000104459.1	GntP family transporter	-
BWI86_RS07430 (BWI86_07445)	ygbM	1472925..1473701 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
BWI86_RS07435 (BWI86_07450)	ygbL	1473706..1474344 (-)	639	WP_094771025.1	aldolase	-
BWI86_RS07440 (BWI86_07455)	otnK	1474341..1475603 (-)	1263	WP_094771024.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=179350 BWI86_RS07420 WP_000081550.1 1470386..1471378(+) (rpoS) [Escherichia coli strain 13C1065T]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=179350 BWI86_RS07420 WP_000081550.1 1470386..1471378(+) (rpoS) [Escherichia coli strain 13C1065T]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715