Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI85_RS15985 Genome accession   NZ_CP019256
Coordinates   3087996..3088472 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 13TMH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3082996..3093472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI85_RS15960 (BWI85_16225) - 3083143..3084057 (+) 915 WP_001274887.1 aminoimidazole riboside kinase -
  BWI85_RS15965 (BWI85_16230) - 3084129..3085286 (+) 1158 Protein_2916 oligosaccharide MFS transporter -
  BWI85_RS15970 (BWI85_16245) - 3085340..3086553 (+) 1214 WP_162829202.1 IS3-like element IS1203 family transposase -
  BWI85_RS15975 (BWI85_16255) - 3087231..3087638 (-) 408 WP_001389100.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BWI85_RS15980 (BWI85_16260) yeeT 3087712..3087933 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  BWI85_RS15985 (BWI85_16265) radC 3087996..3088472 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  BWI85_RS15990 (BWI85_16270) - 3088488..3088973 (-) 486 WP_000214413.1 antirestriction protein -
  BWI85_RS15995 (BWI85_16275) - 3089065..3089883 (-) 819 WP_001610805.1 DUF932 domain-containing protein -
  BWI85_RS16000 (BWI85_16280) - 3090211..3091356 (-) 1146 Protein_2923 autotransporter domain-containing protein -
  BWI85_RS16005 (BWI85_16285) - 3091355..3092107 (-) 753 Protein_2924 IS3-like element IS911 family transposase -
  BWI85_RS16010 (BWI85_16290) - 3092117..3093268 (-) 1152 WP_001389101.1 IS30-like element IS30 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=179293 BWI85_RS15985 WP_001186773.1 3087996..3088472(-) (radC) [Escherichia coli strain 13TMH22]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=179293 BWI85_RS15985 WP_001186773.1 3087996..3088472(-) (radC) [Escherichia coli strain 13TMH22]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392