Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A4V06_RS07060 Genome accession   NZ_CP015410
Coordinates   1427542..1429215 (+) Length   557 a.a.
NCBI ID   WP_002393460.1    Uniprot ID   -
Organism   Enterococcus faecalis strain KB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422542..1434215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V06_RS07030 (A4V06_04845) - 1422793..1423638 (+) 846 WP_002363394.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  A4V06_RS07035 (A4V06_04850) xseA 1423648..1424994 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  A4V06_RS07040 (A4V06_04855) - 1424996..1425226 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  A4V06_RS07045 (A4V06_04860) - 1425226..1426107 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  A4V06_RS07050 (A4V06_04865) - 1426121..1426936 (+) 816 WP_002363395.1 TlyA family RNA methyltransferase -
  A4V06_RS07055 (A4V06_04870) - 1427075..1427524 (+) 450 WP_002363397.1 arginine repressor -
  A4V06_RS07060 (A4V06_04875) recN 1427542..1429215 (+) 1674 WP_002393460.1 DNA repair protein RecN Machinery gene
  A4V06_RS15360 - 1429307..1429417 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  A4V06_RS07070 (A4V06_04880) - 1429485..1430450 (-) 966 WP_002387038.1 magnesium transporter CorA family protein -
  A4V06_RS07075 (A4V06_04885) - 1430695..1431087 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  A4V06_RS07085 (A4V06_04890) mraZ 1431321..1431806 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  A4V06_RS07090 (A4V06_04895) rsmH 1431821..1432777 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  A4V06_RS07095 (A4V06_04900) ftsL 1432794..1433189 (+) 396 WP_065536005.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62600.97 Da        Isoelectric Point: 4.5521

>NTDB_id=179272 A4V06_RS07060 WP_002393460.1 1427542..1429215(+) (recN) [Enterococcus faecalis strain KB1]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDAVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=179272 A4V06_RS07060 WP_002393460.1 1427542..1429215(+) (recN) [Enterococcus faecalis strain KB1]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGAGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATGCTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496

Multiple sequence alignment