Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   A4U98_RS02360 Genome accession   NZ_CP015407
Coordinates   532377..534296 (-) Length   639 a.a.
NCBI ID   WP_065523671.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. animalis strain YL2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 527377..539296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U98_RS02350 (A4U98_02530) - 528937..530451 (+) 1515 WP_065523672.1 polysaccharide deacetylase family protein -
  A4U98_RS02355 (A4U98_02525) rcrQ 530470..532305 (-) 1836 WP_371821025.1 ABC transporter ATP-binding protein Regulator
  A4U98_RS02360 (A4U98_02520) rcrP 532377..534296 (-) 1920 WP_065523671.1 ABC transporter ATP-binding protein Regulator
  A4U98_RS02365 (A4U98_02515) - 534368..534961 (-) 594 WP_065523670.1 MarR family winged helix-turn-helix transcriptional regulator -
  A4U98_RS02370 (A4U98_07640) - 535265..536079 (+) 815 Protein_432 ABC transporter ATP-binding protein -
  A4U98_RS02375 (A4U98_02505) - 536076..538394 (+) 2319 Protein_433 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 70965.72 Da        Isoelectric Point: 4.8662

>NTDB_id=179219 A4U98_RS02360 WP_065523671.1 532377..534296(-) (rcrP) [Bifidobacterium animalis subsp. animalis strain YL2]
MIRIMKYLSKTEIGQLVLSLVTIVGQVYFDLELPSYMSQITRLVETPGSQMRDIWIAGGKMLLVSLGSLACAVVTGYFAA
RVAASFGQRLRSLEFRKVESFGPSEMHRFSTASLITRSTNDITQIQMFITMGLQMLIKAPIMAVWAVCKIAGEGFEWTLA
TGIAVAILIISIAVLMVLVMPKFKAMQQLTDDINLVTRENLTGMRVVRAYNAQDYQEGKFERANSNLTNTQLFTNRAMSV
MMPLMGTIMNGLSLAIYWIGAYLIQDAGLTDKLTLFSNMVVFSSYAMQVVMSFLLMSMVFVLWPRADVSAHRVLEVLDTD
PLVKSGTAERGLTVQEAEQRGIITPAERARYADDLELAGEIEFRDVSFTYPDSREAMLEHISFTANRGDTVAIIGSTGSG
KSSLINLVPRFYDATDGEVLVDGVNVREYDLKTLRDKIGYVPQRSFLFKGTVESNVSYGDRPDEPENVPMIDVSRMSGRK
AEREFLKADEARELTAQEANRVREASDVAQATEFVSKMPKGFQSPIAQDGTNVSGGQKQRLSIARAVYRDPEILIFDDSF
SALDFKTDREVRDALKETAKDATKLIVAQRVGTIMDADCILVLEDGKVVGQGTHRELLETCEVYQEIAKSQLSEEELSA

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=179219 A4U98_RS02360 WP_065523671.1 532377..534296(-) (rcrP) [Bifidobacterium animalis subsp. animalis strain YL2]
ATGATACGAATCATGAAATATCTCTCCAAAACGGAGATAGGGCAGCTGGTGTTGTCGCTGGTCACCATTGTGGGCCAGGT
GTACTTCGACCTCGAACTGCCAAGCTATATGTCACAGATCACGCGGCTCGTGGAGACGCCGGGCAGCCAGATGCGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGCTCGCATGCGCGGTGGTCACCGGCTACTTCGCCGCG
CGCGTGGCCGCCTCGTTCGGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTGGAGTCGTTCGGGCCGTCCGAAATGCA
CCGCTTCTCCACGGCGAGCCTGATTACGCGTTCGACGAACGACATCACGCAGATTCAGATGTTCATCACGATGGGCTTGC
AGATGCTCATCAAGGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGATCCTCATCATCTCGATCGCCGTGCTCATGGTGCTCGTCATGCCGAAGTTCAAGGCAATGCA
GCAGCTCACCGACGACATCAATCTGGTGACGCGCGAGAATCTGACCGGCATGCGCGTCGTGCGCGCCTACAATGCCCAGG
ACTACCAGGAAGGCAAGTTCGAGCGGGCGAACAGCAATCTGACGAACACACAGCTGTTCACGAACCGCGCGATGTCGGTG
ATGATGCCGCTCATGGGCACGATCATGAACGGGCTGTCGCTCGCGATCTACTGGATCGGCGCCTACCTGATCCAGGACGC
CGGTCTGACCGACAAACTCACGCTGTTCTCGAACATGGTCGTGTTCTCCAGCTACGCCATGCAGGTGGTGATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCCGACGTCTCCGCACACCGCGTGCTCGAAGTGCTCGACACCGAC
CCGCTCGTCAAGTCCGGCACCGCAGAGCGCGGGCTCACGGTGCAGGAGGCCGAGCAGCGCGGAATCATCACGCCAGCGGA
ACGTGCGCGATATGCCGACGACCTCGAGCTCGCCGGCGAGATCGAATTCCGCGACGTGAGCTTCACTTACCCCGATTCGC
GCGAGGCGATGCTCGAGCACATCAGTTTCACGGCGAACAGGGGAGACACGGTGGCGATCATCGGCTCCACCGGCTCGGGC
AAGTCGTCGCTCATCAATCTCGTGCCGCGCTTCTACGATGCGACGGACGGCGAGGTGCTCGTGGACGGCGTGAATGTGCG
CGAGTACGACTTGAAGACACTGCGCGACAAGATCGGCTACGTGCCGCAGCGCTCCTTCCTGTTCAAAGGCACCGTCGAAT
CGAATGTGAGCTACGGCGACCGGCCCGACGAACCCGAAAACGTGCCGATGATCGACGTCTCGCGCATGAGCGGCCGCAAG
GCGGAACGGGAGTTCCTCAAGGCCGATGAGGCGCGCGAGCTCACCGCGCAGGAAGCGAACCGCGTGCGCGAGGCGAGCGA
CGTCGCACAGGCCACCGAATTCGTAAGCAAGATGCCGAAAGGCTTCCAGTCGCCGATCGCCCAGGATGGCACGAATGTGT
CGGGCGGTCAGAAACAGCGCCTGTCGATTGCGCGCGCCGTGTACCGCGACCCGGAGATTCTGATCTTCGACGATTCGTTC
TCGGCACTCGACTTCAAAACCGACCGCGAGGTGCGCGACGCGTTGAAGGAGACGGCGAAGGATGCGACGAAGCTCATCGT
GGCGCAGCGCGTCGGCACGATCATGGACGCGGACTGCATTCTCGTGCTCGAGGATGGCAAGGTGGTGGGTCAAGGCACGC
ACCGCGAACTGCTCGAGACCTGCGAGGTGTACCAGGAGATCGCGAAATCGCAGCTGAGCGAGGAGGAGCTCAGTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(378-559)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.69

100

0.495

Multiple sequence alignment