Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4U98_RS02355 Genome accession   NZ_CP015407
Coordinates   530470..532305 (-) Length   611 a.a.
NCBI ID   WP_371821025.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. animalis strain YL2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 525470..537305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U98_RS08655 - 525523..525678 (+) 156 WP_154701386.1 hypothetical protein -
  A4U98_RS02335 (A4U98_02545) - 525841..526110 (-) 270 WP_143432915.1 hypothetical protein -
  A4U98_RS02340 (A4U98_02540) - 526156..526722 (-) 567 WP_065523674.1 GH25 family lysozyme -
  A4U98_RS02345 (A4U98_02535) - 527362..528822 (-) 1461 WP_065523673.1 glycoside hydrolase domain-containing protein -
  A4U98_RS02350 (A4U98_02530) - 528937..530451 (+) 1515 WP_065523672.1 polysaccharide deacetylase family protein -
  A4U98_RS02355 (A4U98_02525) rcrQ 530470..532305 (-) 1836 WP_371821025.1 ABC transporter ATP-binding protein Regulator
  A4U98_RS02360 (A4U98_02520) rcrP 532377..534296 (-) 1920 WP_065523671.1 ABC transporter ATP-binding protein Regulator
  A4U98_RS02365 (A4U98_02515) - 534368..534961 (-) 594 WP_065523670.1 MarR family winged helix-turn-helix transcriptional regulator -
  A4U98_RS02370 (A4U98_07640) - 535265..536079 (+) 815 Protein_432 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 66998.25 Da        Isoelectric Point: 5.2434

>NTDB_id=179218 A4U98_RS02355 WP_371821025.1 530470..532305(-) (rcrQ) [Bifidobacterium animalis subsp. animalis strain YL2]
MGHGRAGAPVEKADDFGGALKELMRFSKRYIPAIVIALILGVGGAICQIIGPDYLGDMTDEITKGLPALVHGKPVLRSID
MAAVAHIGWTLVALYVGYALLSYVQSWMMATVTQRTAQRLRAAIDVKMNKLPLKYFDEHSTGDVMSRITNDVDAVGQTLG
QSLGTLISSITLFVGSLVMMFANNWILALCAVGASLLGMVLMLVVMKFSQKHFVKQQMALGDVNGHVEEMYSGHTVVKAF
GGEADAIRRFERYNNDLYESGWKSQFISGLMMPMMNLVGNLGYVVVCVVGAALAMNGTIEFGVIVAFMLYIRLFTQPLSQ
FAQAFQNLQRCAAGSERVFTFLNEPELADESDKQPLLGYGSNGEITPVEGRVSFEHVKFGYEPNKLVIHDFSADVEPGQK
VAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNGTVRENVAYAKEDVTDEQVVA
ACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQAAMDKLTEGRTSF
VIAHRLSTIRDADMILVMRDGDIVERGTHDELLARNGFYADIYNAQFTLAQ

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=179218 A4U98_RS02355 WP_371821025.1 530470..532305(-) (rcrQ) [Bifidobacterium animalis subsp. animalis strain YL2]
ATGGGACATGGGCGTGCAGGCGCGCCCGTGGAGAAAGCCGATGATTTCGGCGGCGCGCTCAAGGAGCTGATGCGCTTCAG
CAAACGGTACATTCCGGCGATCGTCATCGCGCTGATCCTCGGCGTCGGCGGTGCGATCTGCCAGATCATAGGGCCGGACT
ACCTCGGCGATATGACCGACGAGATCACCAAGGGACTGCCCGCGCTCGTGCACGGCAAGCCGGTGCTGCGTTCGATCGAC
ATGGCCGCGGTGGCGCACATCGGGTGGACGCTCGTGGCGCTCTACGTGGGCTACGCACTGCTTTCGTACGTGCAGAGCTG
GATGATGGCCACCGTCACGCAGCGCACGGCGCAACGCCTGCGCGCGGCCATCGACGTGAAGATGAACAAGCTGCCGCTCA
AATACTTCGACGAGCACAGCACCGGCGACGTGATGAGTCGCATCACGAACGACGTGGACGCGGTGGGCCAGACGCTCGGG
CAGTCCCTTGGCACGCTCATCTCGTCGATCACGCTGTTCGTGGGCTCGCTCGTCATGATGTTCGCGAACAACTGGATCCT
GGCATTGTGCGCAGTGGGCGCGAGCCTGCTCGGCATGGTGCTCATGCTCGTCGTGATGAAGTTCTCGCAGAAGCACTTCG
TCAAGCAGCAGATGGCACTCGGCGACGTGAACGGCCATGTGGAGGAGATGTACAGCGGGCACACCGTGGTCAAGGCCTTC
GGCGGCGAGGCCGACGCGATCCGCAGATTCGAACGCTACAACAACGACCTGTACGAATCGGGTTGGAAGAGCCAGTTCAT
CTCGGGGCTCATGATGCCGATGATGAACCTCGTGGGCAACCTCGGCTACGTGGTCGTGTGCGTGGTCGGCGCGGCGCTCG
CCATGAACGGCACCATCGAATTCGGTGTGATCGTGGCGTTCATGCTCTACATTCGCCTGTTCACGCAGCCGCTCTCGCAG
TTTGCGCAGGCGTTCCAGAATCTGCAACGCTGCGCCGCGGGCTCCGAACGTGTGTTCACCTTCCTCAACGAGCCCGAGCT
CGCCGACGAGTCCGACAAGCAACCGCTGCTCGGCTACGGCAGCAACGGCGAGATCACGCCCGTCGAAGGGCGCGTGAGCT
TCGAGCACGTGAAATTCGGGTATGAGCCGAACAAGCTCGTCATCCATGATTTCTCGGCGGACGTGGAGCCTGGGCAGAAA
GTGGCGATCGTGGGGCCCACCGGCGCGGGCAAGACGACGATGGTGAATCTGCTCATGCGATTCTACGAGATCGCCGGCGG
GAAGATCTCGATCGACGGCATCGACACGAAGAGCGTGCCGCGGTGGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGG
ACACCTGGGTGTTCAACGGCACCGTGCGCGAGAATGTGGCGTATGCGAAGGAAGACGTGACCGACGAGCAGGTGGTCGCC
GCCTGCCGTGCCGTGGGACTCGACCGTTACATTCGCTCGCTGCCAAACGGCTACGACACCGTGCTCGACGAGTCGGCCAC
GCTGTCGCAGGGGCAGAAGCAGCTGCTCACCATCGCGCGCGCCATGGTGCAGGATTCGCCGATCCTCATTCTCGACGAGG
CGACAAGCTCGGTCGATACGCGCACTGAGGAGCTCATCCAGGCGGCGATGGACAAGCTCACCGAGGGGCGCACCTCGTTC
GTCATCGCACACCGGCTCTCCACGATCCGCGATGCCGACATGATCCTCGTCATGCGCGACGGCGACATCGTGGAGCGCGG
CACGCACGACGAGCTTCTGGCACGCAACGGCTTCTATGCCGACATCTACAACGCGCAGTTCACACTCGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-318)

ABC transporter (ABC_tran)

(389-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.008

96.399

0.53

Multiple sequence alignment