Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A4V09_RS11115 Genome accession   NZ_CP015405
Coordinates   2334974..2336350 (-) Length   458 a.a.
NCBI ID   WP_065542403.1    Uniprot ID   A0A1C7I989
Organism   Blautia pseudococcoides strain YL58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2329974..2341350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V09_RS11110 (A4V09_10925) - 2333998..2334924 (-) 927 WP_065542402.1 GNAT family N-acetyltransferase -
  A4V09_RS11115 (A4V09_10930) radA 2334974..2336350 (-) 1377 WP_065542403.1 DNA repair protein RadA Machinery gene
  A4V09_RS11120 (A4V09_10935) - 2336451..2336864 (-) 414 WP_065542404.1 endosialidase -
  A4V09_RS11125 (A4V09_10940) - 2336988..2339450 (-) 2463 WP_065542405.1 ATP-dependent Clp protease ATP-binding subunit -
  A4V09_RS11130 (A4V09_10945) - 2339465..2339833 (-) 369 WP_065542406.1 GntR family transcriptional regulator -
  A4V09_RS11135 (A4V09_10950) purD 2339971..2341245 (-) 1275 WP_065542407.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49534.30 Da        Isoelectric Point: 7.7642

>NTDB_id=179194 A4V09_RS11115 WP_065542403.1 2334974..2336350(-) (radA) [Blautia pseudococcoides strain YL58]
MAKAKKTVFFCQNCGYESAKWMGQCPGCREWNSFVEETVFQGTKKSPGQAAGSAAGGRAGKPMMLSQIDIREDNRIKTSM
EELDRVLGGGVVQGSMVLVGGDPGIGKSTLLLQVCKLLSDAGHKILYISGEESLKQIKMRAQRIGEFNENLRLLCETNLE
IISTTIENEKPEAVIIDSIQTMYHEEVSSAPGSVSQVRESTGILMKIAKGMGISVFIVGHVTKDGSVAGPRVLEHMVDTV
LYFEGDRHASYRILRSVKNRFGSTNEIGVFEMQECGLVEVKNPSQVMLNGRPTDASGTVVVCSLEGTRPILIEIQALVTK
TNFGLPRRTSVGIDYNRVNLLMAVLEKRAGLALGNCDAYVNLAGGMKLGEPAIDLGIVAAIISSYRNRTVDPDTLIFGEV
GLSGEVRGVSQAQQRVKEAEKMGFTTCIMPKANLEGLQGKFKISLIGVGNIKDVMGYI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=179194 A4V09_RS11115 WP_065542403.1 2334974..2336350(-) (radA) [Blautia pseudococcoides strain YL58]
ATGGCAAAGGCGAAAAAGACAGTTTTCTTCTGTCAGAACTGTGGATATGAGTCTGCAAAATGGATGGGGCAGTGTCCCGG
ATGCCGGGAGTGGAATTCATTTGTGGAGGAGACTGTTTTCCAGGGGACTAAAAAAAGCCCGGGACAGGCGGCAGGAAGCG
CAGCGGGCGGCCGTGCAGGCAAACCTATGATGCTCTCTCAAATAGATATCAGGGAGGATAACCGGATCAAGACCAGTATG
GAGGAATTAGACCGGGTTCTGGGCGGCGGTGTGGTCCAGGGCTCTATGGTGCTGGTTGGGGGAGATCCCGGAATTGGAAA
ATCCACCCTTCTTCTGCAGGTATGTAAACTGCTTTCTGATGCAGGTCATAAAATTCTATATATCTCAGGAGAGGAATCCC
TGAAGCAGATTAAAATGCGGGCGCAGCGTATCGGGGAATTCAATGAGAATCTGCGCCTTCTCTGCGAGACGAACCTGGAG
ATCATCAGCACAACCATAGAAAATGAAAAGCCGGAGGCGGTCATTATCGACTCTATCCAGACCATGTATCATGAGGAGGT
GTCCTCCGCACCGGGCAGTGTTTCCCAGGTCCGGGAATCCACAGGTATCTTGATGAAGATTGCAAAAGGAATGGGAATAT
CGGTCTTTATTGTAGGCCACGTGACCAAGGATGGAAGTGTGGCAGGCCCCCGTGTACTGGAACATATGGTGGATACGGTA
CTGTATTTTGAGGGGGACAGACATGCGTCCTACAGAATCTTAAGAAGTGTGAAGAATCGTTTTGGCTCCACCAATGAAAT
CGGTGTATTTGAGATGCAGGAGTGCGGGCTTGTGGAGGTGAAAAACCCCTCTCAGGTTATGTTAAACGGCCGTCCTACGG
ATGCGTCAGGGACTGTGGTGGTTTGTTCTTTAGAGGGGACGCGTCCGATATTGATTGAAATCCAGGCTTTGGTCACAAAG
ACTAATTTCGGTTTGCCGAGGAGAACCTCTGTCGGTATTGATTATAACCGGGTTAATTTACTTATGGCAGTTTTGGAGAA
GCGTGCAGGCTTGGCACTGGGAAACTGCGATGCGTACGTCAACCTTGCGGGCGGTATGAAGCTGGGGGAACCGGCTATTG
ATTTGGGCATTGTGGCTGCCATTATATCCAGCTATAGGAACAGAACGGTGGACCCGGATACCTTGATTTTTGGTGAAGTG
GGTCTGTCCGGTGAGGTGCGGGGAGTCAGCCAGGCACAGCAGAGGGTGAAAGAGGCGGAGAAAATGGGATTTACAACCTG
CATAATGCCGAAAGCAAATCTGGAAGGATTGCAGGGAAAATTCAAAATCTCCTTGATCGGAGTAGGTAATATTAAAGATG
TGATGGGATATATATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)

Subunit ChlI of Mg-chelatase (ChlI)

(349-433)

AAA domain (AAA_25)

(72-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7I989

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

58.643

99.782

0.585
  radA Streptococcus mitis NCTC 12261

56.264

99.345

0.559
  radA Streptococcus mitis SK321

56.044

99.345

0.557
  radA Streptococcus pneumoniae Rx1

56.044

99.345

0.557
  radA Streptococcus pneumoniae D39

56.044

99.345

0.557
  radA Streptococcus pneumoniae R6

56.044

99.345

0.557
  radA Streptococcus pneumoniae TIGR4

56.044

99.345

0.557

Multiple sequence alignment