Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6F53_RS08995 Genome accession   NZ_CP015398
Coordinates   1843243..1845048 (-) Length   601 a.a.
NCBI ID   WP_042522162.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain NPS-QW-145     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838243..1850048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6F53_RS08970 (A6F53_08960) - 1838839..1839738 (-) 900 WP_065201495.1 RluA family pseudouridine synthase -
  A6F53_RS08975 (A6F53_08965) - 1839735..1840538 (-) 804 WP_039107533.1 NAD kinase -
  A6F53_RS08980 (A6F53_08970) - 1840540..1841199 (-) 660 WP_011668198.1 GTP pyrophosphokinase -
  A6F53_RS08985 (A6F53_08975) - 1841526..1842164 (+) 639 WP_024526733.1 ClpXP adapter SpxH family protein -
  A6F53_RS08990 (A6F53_08980) - 1842326..1843189 (+) 864 WP_065201496.1 DegV family protein -
  A6F53_RS08995 (A6F53_08985) pepF 1843243..1845048 (-) 1806 WP_042522162.1 oligoendopeptidase F Regulator
  A6F53_RS09000 (A6F53_08990) - 1845115..1846209 (-) 1095 WP_065201497.1 competence protein CoiA -
  A6F53_RS09005 (A6F53_08995) trmB 1846336..1846983 (-) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A6F53_RS09010 (A6F53_09000) - 1847049..1847840 (-) 792 WP_011668204.1 phosphotransferase family protein -
  A6F53_RS09015 (A6F53_09005) - 1847902..1849128 (-) 1227 WP_065201498.1 ABC transporter permease -
  A6F53_RS09020 (A6F53_09010) - 1849125..1849859 (-) 735 WP_065201499.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67091.09 Da        Isoelectric Point: 4.8246

>NTDB_id=179167 A6F53_RS08995 WP_042522162.1 1843243..1845048(-) (pepF) [Levilactobacillus brevis strain NPS-QW-145]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKAQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=179167 A6F53_RS08995 WP_042522162.1 1843243..1845048(-) (pepF) [Levilactobacillus brevis strain NPS-QW-145]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAGGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAACAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCTCTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCGTCTGCTAAAACTTATAGTGTGCTGAGCGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGATGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAATAATGTGCCAGCAGT
GGTCTATGATACCTTGGTAGAAACAGTCAATGATCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGCCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCCACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCAGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491

Multiple sequence alignment