Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWI82_RS21900 Genome accession   NZ_CP019243
Coordinates   4282996..4283472 (+) Length   158 a.a.
NCBI ID   WP_001186199.1    Uniprot ID   Q83W77
Organism   Escherichia coli strain Combat2C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4277996..4288472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI82_RS21880 (BWI82_21915) agn43 4278136..4281258 (+) 3123 WP_000820396.1 autotransporter adhesin Ag43 -
  BWI82_RS21890 (BWI82_21925) - 4281585..4282403 (+) 819 WP_001234709.1 DUF932 domain-containing protein -
  BWI82_RS21895 (BWI82_21930) - 4282495..4282980 (+) 486 WP_000213723.1 antirestriction protein -
  BWI82_RS21900 (BWI82_21935) radC 4282996..4283472 (+) 477 WP_001186199.1 JAB domain-containing protein Machinery gene
  BWI82_RS21905 (BWI82_21940) - 4283541..4283762 (+) 222 WP_000692353.1 DUF987 domain-containing protein -
  BWI82_RS21910 (BWI82_21950) cbeA 4283925..4284293 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BWI82_RS21915 (BWI82_21955) - 4284383..4284760 (+) 378 WP_000854700.1 TA system toxin CbtA family protein -
  BWI82_RS21920 (BWI82_21960) - 4284757..4285245 (+) 489 WP_000761726.1 DUF5983 family protein -
  BWI82_RS21925 (BWI82_21965) - 4285257..4285454 (+) 198 WP_000839247.1 DUF957 domain-containing protein -
  BWI82_RS21930 (BWI82_21970) - 4285539..4286393 (+) 855 WP_024174313.1 DUF4942 domain-containing protein -
  BWI82_RS21935 (BWI82_21975) - 4286486..4287805 (-) 1320 WP_000144686.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17734.36 Da        Isoelectric Point: 7.6152

>NTDB_id=179064 BWI82_RS21900 WP_001186199.1 4282996..4283472(+) (radC) [Escherichia coli strain Combat2C1]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=179064 BWI82_RS21900 WP_001186199.1 4282996..4283472(+) (radC) [Escherichia coli strain Combat2C1]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83W77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399