Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABE65_RS14840 Genome accession   NZ_CP015378
Coordinates   2862959..2865310 (-) Length   783 a.a.
NCBI ID   WP_066396480.1    Uniprot ID   A0A160INP6
Organism   Fictibacillus phosphorivorans strain G25-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2857959..2870310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE65_RS22080 - 2859150..2859323 (-) 174 WP_197480307.1 hypothetical protein -
  ABE65_RS14825 (ABE65_014825) dtd 2859384..2859830 (-) 447 WP_066396474.1 D-aminoacyl-tRNA deacylase -
  ABE65_RS14830 (ABE65_014830) - 2859853..2862036 (-) 2184 WP_066396477.1 RelA/SpoT family protein -
  ABE65_RS14835 (ABE65_014835) - 2862426..2862938 (-) 513 WP_066239566.1 adenine phosphoribosyltransferase -
  ABE65_RS14840 (ABE65_014840) recJ 2862959..2865310 (-) 2352 WP_066396480.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABE65_RS14845 (ABE65_014845) secDF 2865382..2867551 (-) 2170 Protein_2964 protein translocase subunit SecDF -
  ABE65_RS14850 (ABE65_014850) - 2867815..2868075 (-) 261 WP_066396483.1 post-transcriptional regulator -
  ABE65_RS14855 (ABE65_014855) spoVB 2868173..2869723 (+) 1551 WP_066396486.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 88150.57 Da        Isoelectric Point: 4.7889

>NTDB_id=179026 ABE65_RS14840 WP_066396480.1 2862959..2865310(-) (recJ) [Fictibacillus phosphorivorans strain G25-29]
MLEPRTRWEIQEPSKDKAKWLSQELDIPLLIANLLVVRGIETIEKAEAFLNIDISQFHDPFLMDGMKESVERIHKAVESS
EKILIFGDYDADGVSSTTVMYYALKELGAEFDYYIPNRFTEGYGPNEPALRKAKEDGYSLVVTVDTGISAVHEANIAKEI
GLDFIITDHHEAPPVLPDAYSIINPKKPGCTYPFSGLAGVGVAFKVAHALHGRPPLHLLDYACIGTIADLVPLVDENRVI
AKLGIEALSKTDKIGLQELLKVAGLYEKELTAEDVGFAIGPRVNAAGRLGSAMPVVELFTSSDRDESAMLSEEIDSVNKE
RQGIVNEITKEAIAMVEESFPPEKNEVLVLAKEGWNPGVIGIVASRLVEKFYRPTIVLCLDPEKETAKGSARSIKGFDMF
ENLSESRDILPHFGGHPMAAGMTLSIHDVEELRSRLIQQAKQCLSPEDYQPVTSIDLTARLNEISLETVELLSTLSPFGV
GNPSPRVMVEEVPIREMKKIGSQSNHLKLQVGNGELSVLDCIGFQKGSLLEEMTPYSLVSIVGQIQLNEWNGYRKPQLLL
EDLSVNHFQLFDYRGLKDAAKRLIGLPYSKTCFIAFEDETRRHKDFEALSDQVIGEDELLTLPEDYFKEKNLVFLDVPPS
LSRFSEWLETIGEPSRIYAVFHQSTEHFFTTLPTREHFKWFYGFLAKRKTFNVKRDGAELAKWKGWSKETIDFMSKVFFE
LDFVTIDDGVIFINKEPSKRELESSETYQKKFEQADIENQLVYSSYHSLKSWFTEQTRPKASL

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=179026 ABE65_RS14840 WP_066396480.1 2862959..2865310(-) (recJ) [Fictibacillus phosphorivorans strain G25-29]
ATGTTGGAGCCTAGAACTAGGTGGGAGATTCAAGAACCATCAAAAGACAAGGCAAAATGGTTGTCACAAGAATTAGATAT
CCCTCTTCTAATCGCTAATCTTTTAGTTGTCAGAGGAATTGAAACGATAGAGAAAGCAGAAGCATTTTTAAACATAGATA
TCAGTCAATTTCACGATCCATTCTTGATGGATGGAATGAAAGAGAGCGTTGAGCGGATACATAAAGCTGTAGAATCGAGT
GAAAAGATCTTAATTTTTGGCGATTATGACGCAGATGGTGTAAGCAGTACGACGGTCATGTATTATGCATTAAAAGAACT
CGGCGCAGAGTTTGATTATTACATTCCGAACCGCTTTACAGAAGGTTATGGTCCGAACGAGCCCGCATTAAGAAAAGCGA
AAGAGGACGGCTATTCACTCGTGGTAACGGTTGATACAGGAATCTCAGCTGTACACGAAGCAAATATCGCAAAAGAGATT
GGGCTAGACTTCATTATCACGGACCACCATGAAGCACCTCCTGTATTGCCAGATGCTTATAGTATTATCAACCCTAAAAA
GCCTGGCTGCACCTATCCATTCTCTGGTCTTGCAGGTGTAGGTGTAGCATTTAAAGTCGCACATGCCCTTCATGGTAGGC
CGCCGTTACATTTACTTGATTACGCATGCATTGGTACTATAGCTGATCTTGTACCGCTTGTTGACGAGAATCGAGTGATC
GCGAAATTAGGGATAGAAGCACTTTCCAAAACAGATAAGATCGGTTTGCAAGAATTGTTAAAAGTAGCGGGTCTTTACGA
AAAAGAGCTAACAGCTGAAGATGTAGGTTTCGCGATCGGTCCACGTGTGAATGCAGCTGGAAGACTTGGTTCAGCCATGC
CGGTGGTGGAGTTGTTTACTTCAAGTGATCGAGACGAATCAGCTATGTTGTCAGAAGAGATCGATTCGGTAAATAAGGAG
CGTCAAGGAATCGTAAACGAGATTACAAAAGAAGCGATCGCGATGGTCGAAGAAAGTTTTCCTCCAGAGAAGAACGAAGT
ACTCGTTCTTGCTAAAGAAGGCTGGAACCCAGGGGTTATCGGAATCGTTGCCTCGCGATTGGTTGAAAAGTTTTATCGTC
CAACGATCGTTCTATGTTTGGATCCTGAAAAGGAGACTGCAAAAGGATCGGCACGAAGCATTAAAGGGTTTGATATGTTT
GAGAACCTTTCAGAATCTAGAGACATTCTTCCTCATTTCGGTGGACATCCGATGGCAGCAGGAATGACACTATCTATTCA
TGATGTTGAAGAATTAAGGAGCAGGCTTATTCAGCAAGCTAAGCAATGTTTAAGTCCAGAAGATTATCAACCCGTTACAT
CGATTGATCTTACGGCTCGATTAAATGAGATTTCCTTAGAAACGGTTGAACTGTTAAGTACGCTTTCTCCTTTTGGAGTC
GGAAATCCATCTCCTCGCGTAATGGTTGAAGAAGTTCCGATCCGCGAGATGAAAAAGATAGGAAGTCAATCCAATCACCT
TAAATTGCAGGTGGGTAACGGTGAGCTATCGGTTTTAGATTGCATCGGTTTTCAAAAAGGTAGCTTGTTAGAAGAGATGA
CTCCATATTCCTTGGTTTCAATCGTGGGCCAGATCCAACTGAACGAATGGAACGGATATAGAAAACCTCAGCTTCTTCTT
GAAGATCTTTCTGTCAATCATTTTCAATTGTTTGATTATAGAGGACTTAAAGATGCAGCAAAACGGTTGATCGGTCTGCC
GTATTCTAAAACCTGTTTTATCGCATTTGAAGATGAAACACGAAGGCATAAAGATTTTGAAGCACTGTCTGACCAAGTCA
TCGGTGAAGATGAGTTATTGACTCTACCGGAGGATTATTTTAAAGAAAAGAATTTAGTGTTCTTAGATGTTCCTCCCTCT
CTATCTCGCTTTTCGGAATGGCTGGAAACCATCGGTGAACCTTCAAGGATCTACGCGGTGTTTCACCAGAGCACAGAACA
TTTTTTTACGACTCTACCAACGAGAGAGCACTTTAAATGGTTTTATGGATTTCTTGCAAAAAGGAAAACCTTTAATGTGA
AGAGAGATGGTGCAGAGCTAGCGAAATGGAAAGGCTGGTCAAAAGAAACAATAGATTTCATGTCAAAGGTGTTTTTTGAG
CTGGATTTTGTTACAATAGACGATGGTGTTATTTTCATTAATAAAGAACCTAGCAAACGAGAATTAGAAAGCTCTGAAAC
CTATCAGAAAAAGTTTGAACAAGCAGACATTGAAAATCAGCTCGTTTACTCTTCATATCATTCTTTAAAAAGCTGGTTTA
CAGAACAAACACGGCCAAAAGCCAGTTTGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-773)

RecJ OB domain (RecJ_OB)

(455-562)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160INP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.538

99.617

0.513

Multiple sequence alignment