Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BWI82_RS11165 Genome accession   NZ_CP019243
Coordinates   2163970..2165217 (+) Length   415 a.a.
NCBI ID   WP_001161838.1    Uniprot ID   -
Organism   Escherichia coli strain Combat2C1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2158970..2170217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI82_RS11150 (BWI82_11155) - 2159485..2161161 (+) 1677 WP_001335609.1 polysaccharide biosynthesis/export family protein -
  BWI82_RS11155 (BWI82_11160) kdsB 2161171..2161911 (+) 741 WP_000030760.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BWI82_RS11160 (BWI82_11165) - 2161908..2163935 (+) 2028 WP_148116720.1 capsular polysaccharide biosynthesis protein -
  BWI82_RS11165 (BWI82_11170) kpsS 2163970..2165217 (+) 1248 WP_001161838.1 capsule biosynthesis protein Regulator
  BWI82_RS11170 (BWI82_11175) - 2165699..2166328 (-) 630 WP_000657788.1 CatB-related O-acetyltransferase -
  BWI82_RS11175 (BWI82_11180) - 2166325..2168607 (-) 2283 WP_001534463.1 hypothetical protein -
  BWI82_RS11180 (BWI82_11185) galE 2168692..2169710 (-) 1019 Protein_2085 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49582.34 Da        Isoelectric Point: 10.1886

>NTDB_id=179017 BWI82_RS11165 WP_001161838.1 2163970..2165217(+) (kpsS) [Escherichia coli strain Combat2C1]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGDVKKGLRWII
RTDFSYIKNNKIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=179017 BWI82_RS11165 WP_001161838.1 2163970..2165217(+) (kpsS) [Escherichia coli strain Combat2C1]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGGGAACGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGACATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACACAGGTTAATTGGGTTTATTATGGAGATGTAAAGAAAGGGTTAAGATGGATTATA
AGGACAGATTTTTCTTACATCAAAAATAATAAGATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

94.217

0.373