Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AS891_RS18400 Genome accession   NZ_CP015375
Coordinates   3490159..3490737 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3485159..3495737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS18365 (AS891_18360) lepB 3485165..3485671 (-) 507 WP_003233128.1 signal peptidase I -
  AS891_RS18370 (AS891_18365) yhjE 3485673..3486296 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  AS891_RS18375 (AS891_18370) - 3486448..3486810 (+) 363 WP_003233132.1 hypothetical protein -
  AS891_RS18380 (AS891_18375) yhjC 3487018..3487218 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AS891_RS18385 (AS891_18380) yhjB 3487215..3488684 (+) 1470 WP_003233134.1 sodium:solute symporter family protein -
  AS891_RS18390 (AS891_18385) yhjA 3488727..3488996 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  AS891_RS18395 (AS891_18390) yhxD 3489213..3490112 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  AS891_RS18400 (AS891_18395) comK 3490159..3490737 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AS891_RS18405 (AS891_18400) yhzC 3491030..3491263 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AS891_RS18410 (AS891_18405) yhxC 3491291..3492148 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  AS891_RS18415 (AS891_18410) comW 3492260..3493789 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  AS891_RS23330 hemAT 3494045..3494422 (+) 378 Protein_3597 heme-based aerotactic transducer HemAT -
  AS891_RS23335 - 3494429..3495226 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=178943 AS891_RS18400 WP_003245329.1 3490159..3490737(-) (comK) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=178943 AS891_RS18400 WP_003245329.1 3490159..3490737(-) (comK) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment