Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AS891_RS16305 Genome accession   NZ_CP015375
Coordinates   3113481..3114056 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3108481..3119056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS16280 (AS891_16275) mobB 3108877..3109398 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AS891_RS16285 (AS891_16280) glp 3109359..3110651 (-) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  AS891_RS16290 (AS891_16285) moeB 3110669..3111688 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  AS891_RS16295 (AS891_16290) mobA 3111739..3112338 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  AS891_RS16300 (AS891_16295) cse15 3112475..3113440 (+) 966 WP_003245018.1 spore protein Cse15 -
  AS891_RS16305 (AS891_16300) rok 3113481..3114056 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  AS891_RS16310 (AS891_16305) ykuV 3114522..3114968 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  AS891_RS16315 (AS891_16310) ahpA 3115040..3115582 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  AS891_RS16320 (AS891_16315) mscT 3115819..3116622 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  AS891_RS16325 (AS891_16320) ykuS 3116659..3116904 (-) 246 WP_003232382.1 YkuS family protein -
  AS891_RS16330 (AS891_16325) dapI 3116966..3118090 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  AS891_RS16335 (AS891_16330) dapD 3118160..3118870 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=178930 AS891_RS16305 WP_003232378.1 3113481..3114056(-) (rok) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=178930 AS891_RS16305 WP_003232378.1 3113481..3114056(-) (rok) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment