Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AS891_RS12000 Genome accession   NZ_CP015375
Coordinates   2270785..2271405 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2265785..2276405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS11980 (AS891_11975) dnaD 2266076..2266774 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AS891_RS11985 (AS891_11980) nth 2266793..2267452 (+) 660 WP_009967580.1 endonuclease III -
  AS891_RS11990 (AS891_11985) ypoC 2267449..2267943 (+) 495 WP_009967579.1 YpoC family protein -
  AS891_RS11995 (AS891_11990) ponA 2268019..2270763 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  AS891_RS12000 (AS891_11995) recU 2270785..2271405 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AS891_RS12005 (AS891_12000) yppC 2271446..2272408 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  AS891_RS12010 (AS891_12005) sspM 2272433..2272537 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AS891_RS12015 (AS891_12010) yppD 2272736..2272981 (+) 246 WP_004398488.1 YppD family protein -
  AS891_RS12020 (AS891_12015) yppE 2273027..2273398 (+) 372 WP_003246080.1 YppE family protein -
  AS891_RS12025 (AS891_12020) yppF 2273437..2273625 (-) 189 WP_003230690.1 YppF family protein -
  AS891_RS12030 (AS891_12025) sppG 2273813..2274190 (+) 378 WP_004398696.1 YppG family protein -
  AS891_RS12035 (AS891_12030) ypqA 2274211..2274630 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  AS891_RS12040 (AS891_12035) ptsA 2274768..2275274 (+) 507 WP_009967573.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=178924 AS891_RS12000 WP_004399067.1 2270785..2271405(-) (recU) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=178924 AS891_RS12000 WP_004399067.1 2270785..2271405(-) (recU) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment