Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AS891_RS08975 Genome accession   NZ_CP015375
Coordinates   1746965..1747711 (+) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1741965..1752711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS08960 (AS891_08955) - 1742192..1742383 (-) 192 WP_003222590.1 hypothetical protein -
  AS891_RS08965 (AS891_08960) valS 1742831..1745473 (+) 2643 WP_004398606.1 valine--tRNA ligase -
  AS891_RS08970 (AS891_08965) folC 1745533..1746825 (+) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AS891_RS08975 (AS891_08970) comC 1746965..1747711 (+) 747 WP_010886586.1 prepilin peptidase Machinery gene
  AS891_RS08980 (AS891_08975) spoIIB 1747845..1748843 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  AS891_RS08985 (AS891_08980) maf 1748996..1749565 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AS891_RS08990 (AS891_08985) radC 1749602..1750297 (+) 696 WP_003246034.1 RadC family protein -
  AS891_RS08995 (AS891_08990) mreB 1750389..1751402 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AS891_RS09000 (AS891_08995) mreC 1751433..1752305 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=178904 AS891_RS08975 WP_010886586.1 1746965..1747711(+) (comC) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=178904 AS891_RS08975 WP_010886586.1 1746965..1747711(+) (comC) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment