Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AS891_RS05010 Genome accession   NZ_CP015375
Coordinates   966840..967529 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 961840..972529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS04990 (AS891_04985) tagO 962406..963482 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  AS891_RS04995 (AS891_04990) tagV 963555..964730 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AS891_RS05000 (AS891_04995) yvyE 964730..965383 (-) 654 WP_003227979.1 YigZ family protein -
  AS891_RS05005 (AS891_05000) degS 965600..966757 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AS891_RS05010 (AS891_05005) degU 966840..967529 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AS891_RS05015 (AS891_05010) fakBA 967627..968472 (+) 846 WP_003244125.1 DegV family protein -
  AS891_RS05020 (AS891_05015) comFA 968578..969969 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  AS891_RS05025 (AS891_05020) comFB 970029..970325 (+) 297 WP_003227989.1 late competence protein ComFB -
  AS891_RS05030 (AS891_05025) comFC 970289..971011 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  AS891_RS05035 (AS891_05030) yvyF 971085..971504 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AS891_RS05040 (AS891_05035) flgM 971585..971851 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  AS891_RS05045 (AS891_05040) flgN 971867..972349 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=178890 AS891_RS05010 WP_003219701.1 966840..967529(+) (degU) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=178890 AS891_RS05010 WP_003219701.1 966840..967529(+) (degU) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment