Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BT246_RS30190 Genome accession   NZ_CP015350
Coordinates   5854004..5854525 (-) Length   173 a.a.
NCBI ID   WP_065486023.1    Uniprot ID   A0A9W3SHZ6
Organism   Bacillus thuringiensis strain MYBT18246     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5849004..5859525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT246_RS30170 (BT246_62880) rplI 5850214..5850660 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  BT246_RS30175 (BT246_62890) - 5850657..5852630 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  BT246_RS30180 (BT246_62900) - 5852709..5853644 (-) 936 WP_000814844.1 YybS family protein -
  BT246_RS30185 (BT246_62910) rpsR 5853725..5853958 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  BT246_RS30190 (BT246_62920) ssbA 5854004..5854525 (-) 522 WP_065486023.1 single-stranded DNA-binding protein Machinery gene
  BT246_RS30195 (BT246_62930) rpsF 5854552..5854842 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  BT246_RS30200 (BT246_62940) ychF 5855034..5856134 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  BT246_RS30205 (BT246_62950) - 5856250..5856447 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  BT246_RS30210 (BT246_62960) - 5856468..5857349 (-) 882 WP_065486025.1 mechanosensitive ion channel family protein -
  BT246_RS30215 (BT246_62970) yyaC 5857608..5858204 (+) 597 WP_001020708.1 spore protease YyaC -
  BT246_RS30220 (BT246_62980) spo0J 5858225..5859076 (-) 852 WP_094194599.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18719.45 Da        Isoelectric Point: 4.9222

>NTDB_id=178796 BT246_RS30190 WP_065486023.1 5854004..5854525(-) (ssbA) [Bacillus thuringiensis strain MYBT18246]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPSGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=178796 BT246_RS30190 WP_065486023.1 5854004..5854525(-) (ssbA) [Bacillus thuringiensis strain MYBT18246]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATCTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.186

100

0.728
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.196

100

0.364

Multiple sequence alignment