Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC54_RS01920 Genome accession   NZ_CP019121
Coordinates   395410..395877 (+) Length   155 a.a.
NCBI ID   WP_029855326.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 390410..400877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS01895 (FORC54_0367) - 391144..391653 (-) 510 WP_101958306.1 beta/gamma crystallin-related protein -
  FORC54_RS01900 - 392013..392239 (+) 227 Protein_355 IS3 family transposase -
  FORC54_RS01905 (FORC54_0368) - 392415..394289 (+) 1875 WP_233268798.1 hypothetical protein -
  FORC54_RS25550 - 394631..394819 (-) 189 Protein_357 hypothetical protein -
  FORC54_RS01920 (FORC54_0370) radC 395410..395877 (+) 468 WP_029855326.1 RadC family protein Machinery gene
  FORC54_RS01925 (FORC54_0371) - 395874..396323 (+) 450 WP_101958308.1 DUF2787 family protein -
  FORC54_RS01930 (FORC54_0372) - 396362..396793 (+) 432 WP_101958309.1 DUF2787 domain-containing protein -
  FORC54_RS01935 (FORC54_0373) - 396801..397139 (-) 339 WP_031777613.1 YkvA family protein -
  FORC54_RS01940 (FORC54_0374) - 397279..397530 (+) 252 WP_004724214.1 hypothetical protein -
  FORC54_RS01945 (FORC54_0375) - 397711..398679 (+) 969 WP_101958310.1 helix-turn-helix transcriptional regulator -
  FORC54_RS01950 (FORC54_0376) - 398676..398897 (-) 222 WP_101958311.1 helix-turn-helix transcriptional regulator -
  FORC54_RS01955 (FORC54_0377) - 398975..399964 (+) 990 WP_101958312.1 GTPase family protein -
  FORC54_RS01960 (FORC54_0378) - 400075..400521 (+) 447 WP_101958313.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17209.57 Da        Isoelectric Point: 6.1334

>NTDB_id=178759 FORC54_RS01920 WP_029855326.1 395410..395877(+) (radC) [Vibrio vulnificus strain FORC_054]
MHENNYYFDGPVTADRVLDAAAEILAARALRGDQYCNPDATKTYLSCKLKHHEREVFAVMFLDNQHRLIAFEELFFGTID
SASVYPREVLKAALKVNAAALIFAHNHPSGDATPSQADKQITQRLKEALALVDIRVLDHIVVGDSAISFAERGLL

Nucleotide


Download         Length: 468 bp        

>NTDB_id=178759 FORC54_RS01920 WP_029855326.1 395410..395877(+) (radC) [Vibrio vulnificus strain FORC_054]
ATGCACGAAAATAACTACTATTTTGATGGTCCTGTTACGGCGGACAGGGTGCTCGACGCGGCGGCAGAAATCCTTGCTGC
ACGCGCCCTCCGAGGCGATCAATATTGCAATCCCGATGCAACAAAAACCTATTTATCTTGCAAATTAAAACACCATGAAA
GAGAGGTGTTTGCTGTGATGTTTCTAGATAATCAGCATCGCCTTATTGCCTTTGAAGAGCTCTTCTTTGGCACAATTGAT
TCGGCAAGTGTTTATCCTCGGGAAGTTCTCAAAGCGGCTTTAAAAGTCAATGCCGCCGCCCTCATATTTGCTCACAATCA
CCCTTCTGGTGATGCCACACCTTCCCAAGCCGATAAACAAATTACGCAAAGGCTTAAAGAGGCTTTAGCGCTAGTGGACA
TTCGAGTTCTTGATCATATCGTGGTTGGTGATAGCGCCATCTCTTTTGCAGAAAGGGGGCTACTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.5

77.419

0.445

Multiple sequence alignment