Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FORC54_RS00245 Genome accession   NZ_CP019121
Coordinates   53010..54845 (+) Length   611 a.a.
NCBI ID   WP_017420161.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48010..59845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS00230 (FORC54_0041) - 50283..50954 (-) 672 WP_101958210.1 LysE family translocator -
  FORC54_RS00235 (FORC54_0042) - 51042..51839 (-) 798 WP_026130552.1 AraC family transcriptional regulator -
  FORC54_RS00240 (FORC54_0043) rarD 51914..52828 (-) 915 WP_038969821.1 EamA family transporter RarD -
  FORC54_RS00245 (FORC54_0044) recQ 53010..54845 (+) 1836 WP_017420161.1 ATP-dependent DNA helicase RecQ Machinery gene
  FORC54_RS00250 (FORC54_0045) - 54838..55152 (+) 315 WP_017420162.1 DUF3630 family protein -
  FORC54_RS00255 (FORC54_0046) - 55430..56101 (+) 672 WP_017420163.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  FORC54_RS00260 (FORC54_0047) gppA 56169..57665 (-) 1497 WP_072609213.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  FORC54_RS00265 (FORC54_0048) rhlB 57673..58980 (-) 1308 WP_039452037.1 ATP-dependent RNA helicase RhlB -
  FORC54_RS00270 (FORC54_0049) trxA 59092..59418 (+) 327 WP_011078987.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68985.89 Da        Isoelectric Point: 6.8891

>NTDB_id=178747 FORC54_RS00245 WP_017420161.1 53010..54845(+) (recQ) [Vibrio vulnificus strain FORC_054]
MTSTLLADSSDASMTPQSVLSQVFGYQTFREGQQSAIEAAVEGQDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKHHFPHVPFMALTATADDATRKDILSRLHLNEPHVYLGSFDRPNIRYDLVEKHKPVSQVIRYLESQKGN
CGIIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADITWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRIREHGHDKISTYGLGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDMTLELAVPRLDTAARSAKADKLSNKHYDKKLFAKLRKLRKSIADEEEIPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHYG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=178747 FORC54_RS00245 WP_017420161.1 53010..54845(+) (recQ) [Vibrio vulnificus strain FORC_054]
ATGACTTCCACGCTGCTTGCCGACTCTTCCGATGCCTCGATGACGCCCCAAAGCGTTTTATCACAGGTGTTTGGCTATCA
GACTTTCCGTGAGGGGCAACAGTCGGCGATCGAGGCGGCCGTTGAGGGGCAAGATAGTTTAGTGATCATGCCCACCGGTG
GCGGTAAATCGCTGTGCTATCAAATTCCTGCTCTCGTGCGTTCGGGAATTACCTTAGTGATCTCCCCTTTGATTTCACTA
ATGAAAGATCAGGTTGACCAACTTAAAGCCAATGGTGTCGCGGCAGAATGTGTCAACTCGACCTTATCACGTGACGCTCT
GCTCAGTGTCTACAATCGCATGCACGCGGGACAGCTCAAATTGGTGTACGTTTCGCCTGAGCGGGTGTTGATGCGCGATT
TTATTGAACGGCTGGAAAATCTGCCCTTGGCGATGATTGCTGTCGACGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTCCGCCCCGAATACGCCGCGTTAGGGCAATTGAAGCATCATTTCCCTCACGTGCCGTTTATGGCGCTGACGGCCACCGC
AGACGATGCGACGCGCAAAGACATTTTAAGTCGCTTGCATCTTAATGAGCCTCACGTGTATCTCGGCAGTTTTGATCGCC
CCAACATTCGCTATGACCTAGTGGAGAAGCACAAGCCGGTTTCTCAAGTGATTCGCTATTTGGAAAGCCAAAAAGGCAAT
TGCGGCATTATTTACTGTGGCAGTCGTAAAAAAGTTGAAATGCTGACCGAGAAGCTGTGCAACAACCATATTCGAGCGGC
GGGTTATCACGCCGGTATGGACGCGGATGAGCGCGCGTATGTACAGGAAGCGTTTCAACGAGATGACATCCAAATCGTCG
TGGCGACAGTGGCCTTTGGTATGGGGATCAACAAACCCAATGTGCGCTTTGTGGTGCATTTCGATATTCCACGCAATATC
GAATCGTACTACCAAGAAACAGGCAGAGCAGGGCGTGATGGCCTGCCCGCCGAAGCGATGATGCTCTACGACCCTGCAGA
CATCACTTGGTTGCGCCGCATGTTGGATGAGAAAGATGACGGCCCGCAAAAGCAAGTGGAAAGCCATAAGCTCAATGCCA
TGAGTGCGTTTGCCGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTAAACTATTTCGGTGAATACCGTGAGAAGCCTTGC
GGCAATTGCGATATTTGCTTAGATCCGCCGAAACATTTTGATGCGACGGAAGAAGCGCGCAAAGCGTTGTCGTGCGTTTA
TCGCGTGAATCAAAGCTTTGGTATGGGCTACGTGGTGGAAGTGCTGCGCGGGATGCAAAACATCCGTATCCGTGAACACG
GCCACGATAAGATTTCCACTTACGGTTTAGGGCGCGATCACAGCCATGACTATTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGGCTGCTGTTTCAAAACATCACCCGTAACTCGACCTTGCAGTTAACCGAAGAAGCAAGGCCATTGCTGCGTGG
TGATATGACGTTGGAGCTGGCGGTGCCGCGTTTAGATACTGCCGCGCGCAGTGCCAAAGCCGACAAACTTTCCAACAAGC
ATTACGACAAAAAGTTGTTCGCCAAATTACGTAAGCTGCGCAAATCGATTGCCGATGAGGAAGAGATCCCACCGTATGTG
GTGTTCAGTGATGCGACGCTGATTGATATGGCCGAAATATTGCCGACCTCATATGGTGAAATGCTCGCGGTGAGTGGTGT
GGGGCAGCGCAAACTAGAAAAATACGCGGATCCGTTTTTAGATTTGATTCAGGAGCACATTACTCACTATGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

DEAD/DEAH box helicase (DEAD)

(32-190)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.865

96.89

0.386

Multiple sequence alignment