Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SporoP37_RS00805 Genome accession   NZ_CP015349
Coordinates   121713..123413 (+) Length   566 a.a.
NCBI ID   WP_081241904.1    Uniprot ID   -
Organism   Sporosarcina sp. P37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116713..128413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP37_RS00780 (SporoP37_00785) - 117192..117434 (+) 243 WP_081241900.1 exodeoxyribonuclease VII small subunit -
  SporoP37_RS00785 (SporoP37_00790) - 117427..118311 (+) 885 WP_081241901.1 polyprenyl synthetase family protein -
  SporoP37_RS00790 (SporoP37_00795) dxs 118451..120349 (+) 1899 WP_081244695.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SporoP37_RS00795 (SporoP37_00800) - 120346..121167 (+) 822 WP_085429966.1 TlyA family RNA methyltransferase -
  SporoP37_RS00800 (SporoP37_00805) argR 121246..121695 (+) 450 WP_081241903.1 transcriptional regulator ArgR -
  SporoP37_RS00805 (SporoP37_00810) recN 121713..123413 (+) 1701 WP_081241904.1 DNA repair protein RecN Machinery gene
  SporoP37_RS00810 (SporoP37_00815) - 123524..124477 (+) 954 WP_085429967.1 SpoIVB peptidase S55 domain-containing protein -
  SporoP37_RS00815 (SporoP37_00820) spo0A 124704..125498 (+) 795 WP_085429968.1 sporulation transcription factor Spo0A -
  SporoP37_RS00820 (SporoP37_00825) - 125770..127332 (+) 1563 WP_085429969.1 FapA family protein -
  SporoP37_RS00825 (SporoP37_00830) - 127325..128044 (+) 720 WP_081241907.1 glycerophosphodiester phosphodiesterase family protein -
  SporoP37_RS00830 (SporoP37_00835) - 128060..128302 (-) 243 WP_081241908.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64076.01 Da        Isoelectric Point: 4.7865

>NTDB_id=178711 SporoP37_RS00805 WP_081241904.1 121713..123413(+) (recN) [Sporosarcina sp. P37]
MLSELSIKNFAIIEQLEIAFDDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELQGLFTIDNNIDAVTEK
LTEFGIDAEEGVVILRRDVNASGKSVCRVNGKLVTIAILREIGSLLIDIHGQHENQELMNEKRHIHLLDFFIGEPIDRAM
STYTELYEKYRKLQQLIAAKTQDEQQIAQKIDLYKFQLEEIDAANLVIGEEEELEAERVKLQHFNRLFDRLNTSYEALSL
ESHGLDWVGNSMSDLEEAASIDEELKTLSETVNSSFYALQDVSHDLKRQIDSMEFQPDRLDFVEERLALFLTLKRKYGKS
LEDILIYRDKIADALDQLVNRDERLHQNQELLAQYTEDLTIEANELSIIRKKAALSLEKGIEEQLKQLYMEKATFKVQIK
QKEPLQFDANGFDEVTFMISTNLGEPLKPLVRVASGGELSRMMLALKTIFSQHQGITSIIFDEVDTGVSGRVAQSIAEKI
SMISSHSQVLCISHLPQVAAMADHHYLIKKEVHDGRTTTAIHDVMQKERTEELSRMLSGAEITPLTLQHAEELLILAAQR
KQEFRK

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=178711 SporoP37_RS00805 WP_081241904.1 121713..123413(+) (recN) [Sporosarcina sp. P37]
TTGTTAAGCGAACTTTCGATTAAAAACTTTGCTATTATCGAACAGCTTGAAATCGCATTTGACGACGGACTGACTGTACT
GACCGGTGAAACAGGCGCAGGTAAGTCGATTATCATTGATGCTGTCCAACTTCTAGCAGGAGGCAGAGGTTCACAGGAAT
TCATTCGTCACGGCGCAAAAAAGGCCGAGCTTCAGGGCCTGTTTACAATCGATAATAATATCGATGCCGTGACGGAAAAG
CTGACAGAGTTCGGAATTGACGCAGAAGAAGGTGTTGTGATTTTACGCCGGGATGTGAACGCAAGCGGAAAGTCTGTATG
CCGTGTCAACGGCAAACTGGTCACTATTGCCATTTTGCGTGAAATCGGCTCCTTGCTGATCGATATACATGGCCAGCATG
AGAATCAGGAATTGATGAATGAAAAACGACATATTCATTTGCTCGATTTTTTTATTGGGGAACCAATTGACCGTGCGATG
TCCACGTATACTGAACTCTATGAGAAATATAGGAAGCTGCAGCAACTGATTGCGGCTAAAACACAGGATGAACAGCAAAT
CGCGCAAAAAATTGATTTATATAAGTTTCAGCTGGAAGAAATTGATGCGGCTAATTTAGTGATCGGCGAAGAAGAGGAAC
TGGAAGCCGAGCGTGTGAAGCTTCAGCATTTTAACCGCTTATTCGACCGCCTGAATACTTCATATGAAGCATTGTCCCTT
GAGTCGCACGGACTCGACTGGGTCGGCAATTCGATGAGTGACCTGGAAGAGGCAGCTTCGATTGATGAAGAGCTTAAAAC
ATTGTCGGAAACAGTCAATTCATCGTTTTATGCACTGCAAGATGTCTCACATGATCTGAAACGTCAGATCGACAGTATGG
AATTTCAGCCGGATCGTTTGGATTTTGTTGAAGAGCGGCTGGCGCTGTTTTTGACACTGAAACGAAAATACGGTAAATCG
CTGGAAGATATTTTAATTTATCGCGATAAAATTGCCGATGCACTGGATCAGCTGGTGAATCGCGATGAAAGATTGCATCA
AAACCAGGAATTGTTGGCACAATACACAGAAGATCTTACAATTGAAGCAAATGAATTATCCATTATCCGCAAAAAAGCAG
CCCTTTCCTTGGAAAAAGGGATAGAAGAGCAGCTAAAACAGCTTTATATGGAAAAAGCTACATTCAAAGTGCAAATAAAG
CAAAAAGAACCTCTGCAGTTTGATGCAAACGGATTTGATGAAGTGACGTTTATGATTTCCACTAACTTGGGTGAACCGCT
CAAGCCGTTGGTACGAGTGGCGTCTGGTGGCGAATTATCTCGAATGATGCTGGCGCTGAAGACGATTTTCTCACAGCATC
AAGGGATTACGTCAATTATTTTTGATGAAGTTGATACCGGTGTAAGCGGGCGGGTTGCTCAATCAATTGCAGAAAAAATT
TCCATGATCTCCAGTCATTCGCAAGTTCTTTGTATTTCACATCTGCCGCAAGTGGCTGCGATGGCGGACCATCATTACCT
CATTAAAAAAGAAGTGCATGACGGCCGGACGACGACTGCCATCCATGATGTGATGCAAAAAGAACGGACAGAAGAATTAT
CCCGCATGCTTTCTGGTGCGGAAATTACACCGCTGACGCTGCAGCACGCAGAAGAATTGCTCATTCTGGCGGCCCAGCGC
AAACAGGAATTCCGTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.091

100

0.528

Multiple sequence alignment