Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BRL61_RS07715 Genome accession   NZ_CP019117
Coordinates   1547284..1548663 (-) Length   459 a.a.
NCBI ID   WP_053865732.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SJTUF_J27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1542284..1553663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL61_RS07685 (BRL61_07680) - 1542334..1542450 (-) 117 WP_001791200.1 hypothetical protein -
  BRL61_RS07690 (BRL61_07685) cmk 1542481..1543140 (-) 660 WP_000644393.1 (d)CMP kinase -
  BRL61_RS07695 (BRL61_07690) - 1543217..1544185 (+) 969 WP_000681744.1 asparaginase -
  BRL61_RS07700 (BRL61_07695) ypdA 1544300..1545286 (-) 987 WP_001174260.1 bacillithiol disulfide reductase YpdA -
  BRL61_RS07705 (BRL61_07700) - 1545447..1545536 (-) 90 WP_223200500.1 hypothetical protein -
  BRL61_RS07710 (BRL61_07705) ebpS 1545671..1547131 (-) 1461 WP_000069298.1 elastin-binding protein EbpS -
  BRL61_RS07715 (BRL61_07710) recS 1547284..1548663 (-) 1380 WP_053865732.1 RecQ family ATP-dependent DNA helicase Machinery gene
  BRL61_RS07720 (BRL61_07715) - 1548653..1549606 (-) 954 WP_001163814.1 helix-turn-helix domain-containing protein -
  BRL61_RS07725 (BRL61_07720) - 1549714..1549962 (+) 249 WP_001151997.1 ferredoxin -
  BRL61_RS07730 (BRL61_07725) - 1550068..1550613 (-) 546 WP_001186908.1 ECF transporter S component -
  BRL61_RS07740 (BRL61_07735) - 1551261..1552181 (-) 921 WP_000913246.1 DUF1672 domain-containing protein -
  BRL61_RS14775 - 1552277..1552402 (-) 126 Protein_1451 hypothetical protein -
  BRL61_RS07745 (BRL61_07740) - 1552424..1553308 (-) 885 WP_151895407.1 DUF1672 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52821.13 Da        Isoelectric Point: 6.9225

>NTDB_id=178703 BRL61_RS07715 WP_053865732.1 1547284..1548663(-) (recS) [Staphylococcus aureus strain SJTUF_J27]
MLHDILRNKFGFENFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLIISPLISLMDDQVMQLKINGEK
RVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNFKLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHF
KEAVVLALTATAPPHLQDDLTEMLEIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFHLSTSPSNYIQEIGRAGRDGE
LSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLAPDKQDVLTTLHSFYSIGALKQVFKKSFKRKQLGLFRMIGY
CKLDQCRRKYLLEFFGEYPPAQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=178703 BRL61_RS07715 WP_053865732.1 1547284..1548663(-) (recS) [Staphylococcus aureus strain SJTUF_J27]
ATGTTGCATGATATTTTACGAAACAAATTTGGCTTCGAGAATTTTAAACCGGGACAACAGGAAATTATAGAAAGTATAAT
GTCTCAACAACACACTCTAGGTATTCTTCCAACTGGAAGTGGAAAGAGTTTGTGTTATCAAATACCTACGTATTTATCAG
GTAAGCCGACATTAATTATCTCACCGTTAATATCTTTAATGGATGACCAAGTTATGCAGTTGAAAATAAATGGAGAAAAA
CGTGTAACATGTATTCACTCTGGTATGGATGAAATTGAGAAAAAGCATAATATTAAATGTTTACGACATAGCCGCTTCAT
CTTTCTAAGTCCAGAATTTCTCCTGCAGCCGTCAAATTTTAAATTAATATCTATGATAGACTTTGGCATGATTGTTCTAG
ATGAAGCACATTGTCTATCTGAATGGGGATATGATTTCAGACCACATTATGCTCTAATTGGAAAAGTAACAAAGCATTTT
AAAGAAGCGGTTGTCTTAGCATTGACAGCAACTGCACCACCGCATTTGCAAGATGATTTGACGGAAATGCTAGAGATTCA
ATTCAACGTTATTAAAACTACAATGAATCGCCCAAACATAAGCTTTAAGCATCTTAATTTTCATGATGATGAAGATAAAA
TTGAGTGGTTGCTGCCGTTTCTACAACAGTCGGGACCAACGATTATTTATGTCTCATCGAAAAAGATGTGTCTGAATTTA
GCGCAACTTATTTATGATTCAGGTTTTCTTACTGGCATTTATCATGGTGATATGAATTATCAAGAGCGACACACAGTTCA
ACAACAATTTTTAAATAATGATATTCCGATTATAGTCGCAACGAGTGCTTTTGGTATGGGAATTAATAAAAAAGATATTC
GCACAATCATTCACTTTCATCTTTCAACAAGTCCTTCTAACTACATTCAAGAAATTGGACGTGCGGGTCGCGATGGTGAA
CTAAGTCAGGCAATTAGTTTATTTCAACCGGACGATAAATATATTTTAGAAACGTTATTATTTGCAGATATGATAACAGA
AGAAGATGTACAAAATTTCGAAATAGGAGAATTTTTAGCACCCGATAAACAAGACGTTTTGACAACGTTGCATTCATTCT
ATAGTATCGGCGCCTTGAAACAGGTATTTAAGAAATCATTTAAACGAAAGCAATTAGGACTCTTTCGTATGATTGGCTAT
TGCAAATTGGATCAATGTAGACGGAAGTATTTATTAGAATTTTTCGGTGAATATCCACCGGCACAAGATCGATGTTGTGA
CAATGATTCTAATATAACTGATATCGCAATTTTAAATAAGAAGAAGGTAATTAGAAGTATTGGATTTGATGAAAAGTTGC
AAAATTTATTTCTCAGATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-175)

Helicase conserved C-terminal domain (Helicase_C)

(212-318)

RecQ zinc-binding (RecQ_Zn_bind)

(388-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

37.528

98.693

0.37