Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SporoP32a_RS07900 Genome accession   NZ_CP015348
Coordinates   1583532..1584482 (-) Length   316 a.a.
NCBI ID   WP_085427401.1    Uniprot ID   A0A2G5XDH4
Organism   Sporosarcina ureae strain P32a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578532..1589482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP32a_RS07880 (SporoP32a_07820) - 1579282..1580424 (-) 1143 WP_198166268.1 MFS transporter -
  SporoP32a_RS07885 (SporoP32a_07825) - 1580836..1581798 (-) 963 WP_085427398.1 siderophore ABC transporter substrate-binding protein -
  SporoP32a_RS07890 (SporoP32a_07830) - 1581831..1582592 (-) 762 WP_085427399.1 ABC transporter ATP-binding protein -
  SporoP32a_RS07895 (SporoP32a_07835) - 1582589..1583539 (-) 951 WP_085427400.1 iron chelate uptake ABC transporter family permease subunit -
  SporoP32a_RS07900 (SporoP32a_07840) ceuB 1583532..1584482 (-) 951 WP_085427401.1 ABC transporter permease Machinery gene
  SporoP32a_RS07905 (SporoP32a_07845) - 1584713..1585576 (-) 864 WP_085427402.1 DUF6612 family protein -
  SporoP32a_RS07910 (SporoP32a_07850) hflX 1585880..1587148 (-) 1269 WP_085427403.1 GTPase HflX -
  SporoP32a_RS07915 (SporoP32a_07855) - 1587200..1587901 (-) 702 WP_198166245.1 VOC family protein -
  SporoP32a_RS07920 (SporoP32a_07860) - 1588088..1588555 (+) 468 WP_085427405.1 nucleoside deaminase -
  SporoP32a_RS07925 (SporoP32a_07865) nfsA 1588649..1589380 (+) 732 WP_085427406.1 oxygen-insensitive NADPH nitroreductase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34696.99 Da        Isoelectric Point: 10.1691

>NTDB_id=178687 SporoP32a_RS07900 WP_085427401.1 1583532..1584482(-) (ceuB) [Sporosarcina ureae strain P32a]
MKKRYLIIAVILLSFVSLFVGASRITPADLLDWRSEETEIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMLIFTNATLLEKMAVSFTFALLGTFLFMQILDRIKFKDAIFIPLVGLMFGSILSSITTFFAFKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFAKNLGLAYKSIVNIGLVLVALITTTVVLTVGL
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAVFLLICDILGRVIIFPYEISISLMVGVIGSAIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=178687 SporoP32a_RS07900 WP_085427401.1 1583532..1584482(-) (ceuB) [Sporosarcina ureae strain P32a]
ATGAAGAAACGTTACTTAATTATAGCGGTTATACTTCTATCATTCGTTTCGCTGTTTGTTGGCGCAAGCCGAATCACACC
AGCGGACCTATTAGACTGGCGCTCAGAAGAAACAGAGATTTTCTTAATTAGTCGAGTTCCACGATTAGTCGCGATACTGC
TTGCAGGTGCCGGAATGAGTATTGCCGGTTTAATCATGCAACAACTTAGCCGAAATAAATTCGTTTCCCCAACTACGGCA
GGCACATTAGACGCGACCAAGCTTGGAATCTTAGTATCTATGTTGATATTTACTAACGCAACACTACTTGAAAAAATGGC
GGTCTCATTCACATTTGCCTTACTTGGTACATTCTTGTTCATGCAAATCCTTGACCGTATTAAATTTAAAGATGCGATAT
TCATTCCGCTTGTTGGATTGATGTTCGGTAGCATCTTATCTTCCATTACCACATTCTTTGCATTTAAAGCTAACGTGATT
CAGAACATGTCTGCTTGGCTTCAAGGAGACTTTTCCATGATCATGAAAGGCCGTTATGAGCTTTTATACATCAGTATTCC
TGTGTTAATCATTACATATTTATATGCGAATCGATTTACAGTGGCGGGAATGGGAGAAGATTTTGCCAAGAACTTAGGAC
TAGCTTACAAGAGTATAGTCAATATTGGATTAGTCCTAGTCGCATTGATTACGACAACTGTAGTATTGACAGTGGGACTG
ATTCCTTTCTTAGGATTAATCATCCCGAACATCGTCTCCATCTTTAAAGGAGATCATCTACAAAAGACGTTGCCACATAC
CGCATTACTAGGCGCGGTTTTCCTTCTTATCTGTGACATTCTGGGCAGGGTTATTATATTCCCGTATGAGATCTCGATTA
GTTTAATGGTCGGTGTCATCGGAAGCGCAATCTTCCTGTTCTTGTTGTTTAGGGGGAAAGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5XDH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.035

99.051

0.525

Multiple sequence alignment