Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BVL38_RS09480 Genome accession   NZ_CP019071
Coordinates   1867900..1868376 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain CRE1493     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862900..1873376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL38_RS09440 (BVL38_09580) tmaR 1864039..1864368 (+) 330 WP_000450409.1 DUF496 family protein -
  BVL38_RS28855 (BVL38_09585) - 1864469..1864651 (-) 183 WP_024198358.1 EutP/PduV family microcompartment system protein -
  BVL38_RS28950 - 1865105..1866133 (-) 1029 Protein_1743 IS110 family transposase -
  BVL38_RS27960 (BVL38_09595) - 1866292..1866384 (-) 93 Protein_1744 hypothetical protein -
  BVL38_RS09460 (BVL38_09600) - 1866445..1866621 (-) 177 Protein_1745 DUF5983 family protein -
  BVL38_RS09465 (BVL38_09605) - 1866618..1866995 (-) 378 WP_042046912.1 TA system toxin CbtA family protein -
  BVL38_RS09470 (BVL38_09610) - 1867085..1867453 (-) 369 WP_135145692.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BVL38_RS09475 (BVL38_09620) - 1867616..1867837 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  BVL38_RS09480 (BVL38_09625) radC 1867900..1868376 (-) 477 WP_001186774.1 JAB domain-containing protein Machinery gene
  BVL38_RS09485 (BVL38_09630) - 1868392..1868865 (-) 474 WP_000855059.1 antirestriction protein -
  BVL38_RS09495 (BVL38_09640) - 1869207..1870025 (-) 819 WP_001234729.1 DUF932 domain-containing protein -
  BVL38_RS09505 (BVL38_09650) - 1870143..1870338 (-) 196 Protein_1752 DUF905 family protein -
  BVL38_RS09510 (BVL38_09655) - 1870409..1873225 (-) 2817 Protein_1753 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=178535 BVL38_RS09480 WP_001186774.1 1867900..1868376(-) (radC) [Escherichia coli strain CRE1493]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=178535 BVL38_RS09480 WP_001186774.1 1867900..1868376(-) (radC) [Escherichia coli strain CRE1493]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGGC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399