Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   A5478_RS09980 Genome accession   NZ_CP015342
Coordinates   2235811..2236617 (-) Length   268 a.a.
NCBI ID   WP_050598156.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7632     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230811..2241617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5478_RS09955 (A5478_09955) - 2231249..2231902 (-) 654 WP_027224486.1 lysoplasmalogenase -
  A5478_RS09960 (A5478_09960) - 2231982..2232482 (-) 501 WP_014844283.1 hypothetical protein -
  A5478_RS09965 (A5478_09965) - 2232974..2233834 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  A5478_RS09970 (A5478_09970) - 2233951..2235147 (-) 1197 WP_027224485.1 murein transglycosylase A -
  A5478_RS09975 (A5478_09975) lpp1976 2235257..2235814 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  A5478_RS09980 (A5478_09980) lpp1977 2235811..2236617 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  A5478_RS09985 (A5478_09985) lpp1978 2236556..2236870 (-) 315 WP_027224483.1 type IV pilus modification PilV family protein Machinery gene
  A5478_RS09990 (A5478_09990) hisC 2237030..2238139 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  A5478_RS09995 (A5478_09995) - 2238176..2238517 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  A5478_RS10000 (A5478_10000) secF 2238706..2239623 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  A5478_RS10005 (A5478_10005) secD 2239636..2241492 (-) 1857 WP_011214250.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31301.36 Da        Isoelectric Point: 9.4356

>NTDB_id=178524 A5478_RS09980 WP_050598156.1 2235811..2236617(-) (lpp1977) [Legionella pneumophila strain D-7632]
MLRGLKKASQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFISPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLQFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
INQRSVLDFSIGSNKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=178524 A5478_RS09980 WP_050598156.1 2235811..2236617(-) (lpp1977) [Legionella pneumophila strain D-7632]
ATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACTCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATACCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATAAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCAGTTCCGGTACGACGAAATTGCTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAATCAGAGGTCAGTATTGGATTTTTCAATTGGTAGTAATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

97.388

100

0.974
  lpp1977 Legionella pneumophila strain ERS1305867

97.388

100

0.974

Multiple sequence alignment