Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6F60_RS11275 Genome accession   NZ_CP015338
Coordinates   2270623..2272428 (-) Length   601 a.a.
NCBI ID   WP_086231895.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain 100D8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2265623..2277428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6F60_RS11250 (A6F60_11160) - 2266226..2267125 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  A6F60_RS11255 (A6F60_11165) - 2267122..2267925 (-) 804 WP_021740943.1 NAD kinase -
  A6F60_RS11260 (A6F60_11170) - 2267927..2268586 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  A6F60_RS11265 (A6F60_11175) - 2268900..2269538 (+) 639 WP_011668199.1 ClpXP adapter SpxH family protein -
  A6F60_RS11270 (A6F60_11180) - 2269701..2270564 (+) 864 WP_011668200.1 DegV family protein -
  A6F60_RS11275 (A6F60_11185) pepF 2270623..2272428 (-) 1806 WP_086231895.1 oligoendopeptidase F Regulator
  A6F60_RS11280 (A6F60_11190) - 2272495..2273589 (-) 1095 WP_082265306.1 competence protein CoiA -
  A6F60_RS11285 (A6F60_11195) trmB 2273716..2274363 (-) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A6F60_RS11290 (A6F60_11200) - 2274429..2275220 (-) 792 WP_011668204.1 phosphotransferase family protein -
  A6F60_RS11295 (A6F60_11205) - 2275282..2276508 (-) 1227 WP_011668205.1 ABC transporter permease -
  A6F60_RS11300 (A6F60_11210) - 2276505..2277239 (-) 735 WP_011668206.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67187.35 Da        Isoelectric Point: 4.8810

>NTDB_id=178494 A6F60_RS11275 WP_086231895.1 2270623..2272428(-) (pepF) [Levilactobacillus brevis strain 100D8]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKTAIAAIKVQITVVAGLKGQLAQSGVALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNEHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=178494 A6F60_RS11275 WP_086231895.1 2270623..2272428(-) (pepF) [Levilactobacillus brevis strain 100D8]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAAGCAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGTGCAAATAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
TCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCGGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAACAATGTGCCAGCAGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGAGCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTATCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTTGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACA
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGTTTGGCAGAATTCACGCAATTGGCGCATGAATTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491

Multiple sequence alignment