Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BVL39_RS17250 Genome accession   NZ_CP019051
Coordinates   3358618..3359094 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain CRE1540     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3353618..3364094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL39_RS17205 (BVL39_17365) sbmC 3354111..3354584 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BVL39_RS17210 (BVL39_17370) yeeA 3354782..3355840 (+) 1059 WP_001200905.1 FUSC family protein -
  BVL39_RS17215 (BVL39_17375) tmaR 3356012..3356341 (+) 330 WP_000450409.1 DUF496 family protein -
  BVL39_RS17220 - 3356442..3356624 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BVL39_RS17225 - 3356687..3356824 (+) 138 Protein_3129 transposase domain-containing protein -
  BVL39_RS29245 (BVL39_17385) - 3357113..3357205 (-) 93 Protein_3130 DUF957 domain-containing protein -
  BVL39_RS17230 (BVL39_17390) yeeW 3357239..3357433 (-) 195 WP_000988599.1 DUF5983 family protein -
  BVL39_RS17235 cbtA 3357430..3357803 (-) 374 Protein_3132 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BVL39_RS17240 (BVL39_17405) cbeA 3357892..3358260 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BVL39_RS17245 (BVL39_17410) yeeT 3358334..3358555 (-) 222 WP_101973118.1 DUF987 domain-containing protein -
  BVL39_RS17250 (BVL39_17415) radC 3358618..3359094 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  BVL39_RS17255 (BVL39_17420) - 3359110..3359589 (-) 480 WP_000860076.1 antirestriction protein -
  BVL39_RS17260 (BVL39_17425) - 3359671..3360492 (-) 822 WP_061350965.1 DUF932 domain-containing protein -
  BVL39_RS17270 (BVL39_17435) - 3360713..3361123 (-) 411 WP_000846713.1 hypothetical protein -
  BVL39_RS17275 (BVL39_17440) - 3361139..3361822 (-) 684 WP_000775500.1 hypothetical protein -
  BVL39_RS17280 (BVL39_17445) - 3361958..3363028 (-) 1071 WP_001506252.1 patatin-like phospholipase family protein -
  BVL39_RS17285 (BVL39_17450) - 3363025..3363930 (-) 906 WP_001406681.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=178478 BVL39_RS17250 WP_001186773.1 3358618..3359094(-) (radC) [Escherichia coli strain CRE1540]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=178478 BVL39_RS17250 WP_001186773.1 3358618..3359094(-) (radC) [Escherichia coli strain CRE1540]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392