Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BVL39_RS17190 Genome accession   NZ_CP019051
Coordinates   3351190..3352617 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain CRE1540     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3346190..3357617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL39_RS17160 (BVL39_17330) yeeZ 3346245..3347069 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BVL39_RS17165 (BVL39_17335) yeeY 3347115..3348044 (+) 930 WP_000803337.1 LysR substrate-binding domain-containing protein -
  BVL39_RS17170 yoeI 3348259..3348321 (+) 63 WP_010723108.1 membrane protein YoeI -
  BVL39_RS17175 (BVL39_17340) plaP 3348311..3349669 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BVL39_RS17180 (BVL39_17345) tsuA 3349848..3350906 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  BVL39_RS17185 (BVL39_17350) tsuB 3350920..3351147 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BVL39_RS17190 (BVL39_17355) sbcB 3351190..3352617 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  BVL39_RS17200 (BVL39_17360) dacD 3352826..3353992 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BVL39_RS17205 (BVL39_17365) sbmC 3354111..3354584 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BVL39_RS17210 (BVL39_17370) yeeA 3354782..3355840 (+) 1059 WP_001200905.1 FUSC family protein -
  BVL39_RS17215 (BVL39_17375) tmaR 3356012..3356341 (+) 330 WP_000450409.1 DUF496 family protein -
  BVL39_RS17220 - 3356442..3356624 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BVL39_RS17225 - 3356687..3356824 (+) 138 Protein_3129 transposase domain-containing protein -
  BVL39_RS29245 (BVL39_17385) - 3357113..3357205 (-) 93 Protein_3130 DUF957 domain-containing protein -
  BVL39_RS17230 (BVL39_17390) yeeW 3357239..3357433 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=178477 BVL39_RS17190 WP_000980570.1 3351190..3352617(-) (sbcB) [Escherichia coli strain CRE1540]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=178477 BVL39_RS17190 WP_000980570.1 3351190..3352617(-) (sbcB) [Escherichia coli strain CRE1540]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581