Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BVL39_RS13375 Genome accession   NZ_CP019051
Coordinates   2598424..2598939 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain CRE1540     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2593424..2603939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL39_RS13330 (BVL39_13440) csrA 2593876..2594061 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BVL39_RS13360 (BVL39_13470) yqaB 2595654..2596220 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BVL39_RS13365 (BVL39_13475) yqaA 2596217..2596645 (+) 429 WP_001287454.1 YqaA family protein -
  BVL39_RS13370 (BVL39_13480) gshA 2596718..2598274 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BVL39_RS13375 (BVL39_13485) luxS 2598424..2598939 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  BVL39_RS13380 (BVL39_13490) emrB 2599003..2600541 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BVL39_RS13385 (BVL39_13495) emrA 2600558..2601730 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BVL39_RS13390 (BVL39_13500) emrR 2601857..2602387 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BVL39_RS13395 (BVL39_13505) ygaH 2602478..2602813 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BVL39_RS13400 (BVL39_13510) ygaZ 2602803..2603540 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=178467 BVL39_RS13375 WP_001130210.1 2598424..2598939(+) (luxS) [Escherichia coli strain CRE1540]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=178467 BVL39_RS13375 WP_001130210.1 2598424..2598939(+) (luxS) [Escherichia coli strain CRE1540]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment