Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AT570_RS03200 Genome accession   NZ_CP019034
Coordinates   704732..705247 (+) Length   171 a.a.
NCBI ID   WP_000477155.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699732..710247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT570_RS03180 (AT570_03180) - 700052..701512 (+) 1461 WP_000004971.1 amino acid permease -
  AT570_RS03185 (AT570_03185) - 701788..702993 (+) 1206 WP_000512695.1 RtcB family protein -
  AT570_RS19590 - 702997..703155 (+) 159 WP_000692859.1 hypothetical protein -
  AT570_RS03195 (AT570_03195) omp38 703280..704350 (-) 1071 WP_000777879.1 outer membrane protein Omp38 -
  AT570_RS03200 (AT570_03200) fimT 704732..705247 (+) 516 WP_000477155.1 GspH/FimT family pseudopilin Machinery gene
  AT570_RS03205 (AT570_03205) - 705356..706531 (+) 1176 WP_000129971.1 thiolase family protein -
  AT570_RS03210 (AT570_03210) - 706658..707101 (+) 444 WP_001176578.1 VOC family protein -
  AT570_RS03215 (AT570_03215) - 707144..707497 (-) 354 WP_000457783.1 DMT family transporter -
  AT570_RS03220 (AT570_03220) - 707580..708065 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  AT570_RS03225 (AT570_03225) - 708058..709701 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19608.83 Da        Isoelectric Point: 8.8196

>NTDB_id=178352 AT570_RS03200 WP_000477155.1 704732..705247(+) (fimT) [Acinetobacter baumannii strain AB042]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRLISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=178352 AT570_RS03200 WP_000477155.1 704732..705247(+) (fimT) [Acinetobacter baumannii strain AB042]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCTTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

44.578

97.076

0.433