Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BE930_RS29060 Genome accession   NZ_CP019029
Coordinates   5248127..5249551 (-) Length   474 a.a.
NCBI ID   WP_039052523.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_881     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5243127..5254551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE930_RS29035 (BE930_29645) yeeZ 5243182..5244006 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BE930_RS29040 (BE930_29650) yeeY 5244052..5244981 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BE930_RS29650 yoeI 5245196..5245258 (+) 63 WP_010723108.1 membrane protein YoeI -
  BE930_RS29045 (BE930_29655) plaP 5245248..5246606 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BE930_RS29050 (BE930_29660) tsuA 5246785..5247843 (+) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  BE930_RS29055 (BE930_29665) tsuB 5247857..5248084 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BE930_RS29060 (BE930_29670) sbcB 5248127..5249551 (-) 1425 WP_039052523.1 exodeoxyribonuclease I Machinery gene
  BE930_RS29065 (BE930_29675) - 5249733..5250911 (+) 1179 WP_039052524.1 site-specific integrase -
  BE930_RS29070 (BE930_29680) - 5250892..5251083 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  BE930_RS29075 (BE930_29685) - 5251114..5251281 (-) 168 WP_039052525.1 hypothetical protein -
  BE930_RS29080 (BE930_29690) - 5251382..5251666 (-) 285 WP_020231265.1 DUF4752 family protein -
  BE930_RS29085 (BE930_29695) - 5251666..5252493 (-) 828 WP_078207963.1 DUF551 domain-containing protein -
  BE930_RS29655 - 5252827..5253005 (-) 179 Protein_4996 hypothetical protein -
  BE930_RS29095 (BE930_29705) - 5253007..5253627 (-) 621 WP_078207964.1 ead/Ea22-like family protein -
  BE930_RS29100 (BE930_29710) - 5253614..5253868 (-) 255 WP_078207965.1 hypothetical protein -
  BE930_RS29105 (BE930_29715) - 5253865..5254032 (-) 168 WP_078207966.1 DUF2737 family protein -
  BE930_RS29110 (BE930_29720) - 5254043..5254339 (-) 297 WP_078207967.1 phage anti-RecBCD protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54289.53 Da        Isoelectric Point: 5.2440

>NTDB_id=178339 BE930_RS29060 WP_039052523.1 5248127..5249551(-) (sbcB) [Escherichia coli strain Ecol_881]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAE
RLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=178339 BE930_RS29060 WP_039052523.1 5248127..5249551(-) (sbcB) [Escherichia coli strain Ecol_881]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCTGAG
CGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGTTGT
GGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCGACG
CCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGATAAG
CGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586