Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V471_RS03775 Genome accession   NZ_CP015283
Coordinates   716828..717766 (+) Length   312 a.a.
NCBI ID   WP_014633661.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 711828..722766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS03755 (V471_03720) - 712039..713685 (+) 1647 WP_014633665.1 peptide ABC transporter substrate-binding protein -
  V471_RS03760 (V471_03725) - 713816..714730 (+) 915 WP_045001977.1 ABC transporter permease -
  V471_RS03765 (V471_03730) - 714741..715772 (+) 1032 WP_014633663.1 ABC transporter permease -
  V471_RS03770 (V471_03735) oppD 715786..716826 (+) 1041 WP_014633662.1 ABC transporter ATP-binding protein Regulator
  V471_RS03775 (V471_03740) amiF 716828..717766 (+) 939 WP_014633661.1 ABC transporter ATP-binding protein Regulator
  V471_RS03780 (V471_03745) - 717819..719068 (-) 1250 Protein_682 ISL3 family transposase -
  V471_RS03785 (V471_03750) - 719308..719667 (+) 360 WP_045001973.1 hypothetical protein -
  V471_RS03790 (V471_03755) hslO 719747..720613 (+) 867 WP_002883609.1 Hsp33 family molecular chaperone HslO -
  V471_RS03795 (V471_03760) dusB 720606..721583 (+) 978 WP_002886445.1 tRNA dihydrouridine synthase DusB -
  V471_RS03800 (V471_03765) - 721747..722190 (+) 444 WP_084871120.1 zinc-dependent MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35273.04 Da        Isoelectric Point: 6.5085

>NTDB_id=178288 V471_RS03775 WP_014633661.1 716828..717766(+) (amiF) [Streptococcus salivarius strain ATCC 25975]
MTQERKKLVELKNVSLTFNKGKSNEVKAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSILKLYDIDSGTVTFAGNDISSL
KGKDLHDFRKTAQMIFQDPQASLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELINLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNPHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGEKRQMYEIRTGHFVYATEAEAKNYKEEANVN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=178288 V471_RS03775 WP_014633661.1 716828..717766(+) (amiF) [Streptococcus salivarius strain ATCC 25975]
ATGACACAAGAACGTAAGAAGTTAGTAGAATTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAAGTTAA
GGCCATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTCGGCCTAGTTGGAGAATCTGGTTCAGGTAAAACGA
CCATTGGGCGTTCTATTCTAAAGCTTTATGATATTGATTCGGGTACTGTTACCTTTGCTGGTAATGATATATCAAGTTTA
AAAGGGAAAGACCTTCATGATTTCCGTAAGACAGCTCAGATGATTTTTCAAGATCCTCAAGCTAGTCTTAATGGACGAAT
GAAGATTCGTGATATTATTGCTGAGGGGATTGATATTCATAAATTGGCTAAATCCAAGGAAGAACGTGAAGCCAAGGTTA
AAGAACTTATTAATTTGGTGGGATTAAATGAAGATCACTTATCAAGATATCCTCATGAATTTTCTGGTGGTCAGCGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTCAATCCTCATTTTATTGTAGCAGACGAACCTATCTCTGCTTTAGATGTTTC
TATTCAAGCACAAGTAGTTAATTTGATGCAAAAGTTACAACACGAACAGGGGTTAACTTATTTGTTTATTGCACATGACT
TGTCAATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTCCTTGAGGTAGGACCAGCAGATGAG
ATTTACCATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCTGCCATTCCAGAACCAGACCCAGAAAGAGAGCGGAA
ACGTCAACATTTGATTTATGATTCCTCTATTGAAAATGATGGGGAAAAGAGACAAATGTATGAAATCCGAACAGGACATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAATGTAAATTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.426

97.756

0.532
  amiF Streptococcus thermophilus LMG 18311

54.098

97.756

0.529
  amiF Streptococcus salivarius strain HSISS4

53.77

97.756

0.526

Multiple sequence alignment