Detailed information NTG0178288

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: V471_RS03775
• Genome accession: NZ_CP015283
• Coordinates: 716828..717766 (+)
• Length: 312 a.a.
• NCBI ID: WP_014633661.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ATCC 25975
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	717812..719068	716828..717766	flank	46

Gene organization within MGE regions

Location: 716828..719068

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V471_RS03775 (V471_03740)	amiF	716828..717766 (+)	939	WP_014633661.1	ABC transporter ATP-binding protein	Regulator
V471_RS03780 (V471_03745)	-	717819..719068 (-)	1250	Protein_682	ISL3 family transposase	-

Sequence

Protein

• Length: 312 a.a.
• Molecular weight: 35273.04 Da
• Isoelectric Point: 6.5085

>NTDB_id=178288 V471_RS03775 WP_014633661.1 716828..717766(+) (amiF) [Streptococcus salivarius strain ATCC 25975]
MTQERKKLVELKNVSLTFNKGKSNEVKAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSILKLYDIDSGTVTFAGNDISSL
KGKDLHDFRKTAQMIFQDPQASLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELINLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNPHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGEKRQMYEIRTGHFVYATEAEAKNYKEEANVN

Nucleotide

• Length: 939 bp

>NTDB_id=178288 V471_RS03775 WP_014633661.1 716828..717766(+) (amiF) [Streptococcus salivarius strain ATCC 25975]
ATGACACAAGAACGTAAGAAGTTAGTAGAATTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAAGTTAA
GGCCATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTCGGCCTAGTTGGAGAATCTGGTTCAGGTAAAACGA
CCATTGGGCGTTCTATTCTAAAGCTTTATGATATTGATTCGGGTACTGTTACCTTTGCTGGTAATGATATATCAAGTTTA
AAAGGGAAAGACCTTCATGATTTCCGTAAGACAGCTCAGATGATTTTTCAAGATCCTCAAGCTAGTCTTAATGGACGAAT
GAAGATTCGTGATATTATTGCTGAGGGGATTGATATTCATAAATTGGCTAAATCCAAGGAAGAACGTGAAGCCAAGGTTA
AAGAACTTATTAATTTGGTGGGATTAAATGAAGATCACTTATCAAGATATCCTCATGAATTTTCTGGTGGTCAGCGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTCAATCCTCATTTTATTGTAGCAGACGAACCTATCTCTGCTTTAGATGTTTC
TATTCAAGCACAAGTAGTTAATTTGATGCAAAAGTTACAACACGAACAGGGGTTAACTTATTTGTTTATTGCACATGACT
TGTCAATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTCCTTGAGGTAGGACCAGCAGATGAG
ATTTACCATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCTGCCATTCCAGAACCAGACCCAGAAAGAGAGCGGAA
ACGTCAACATTTGATTTATGATTCCTCTATTGAAAATGATGGGGAAAAGAGACAAATGTATGAAATCCGAACAGGACATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAATGTAAATTAG

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.426	97.756	0.532
amiF	Streptococcus thermophilus LMG 18311	54.098	97.756	0.529
amiF	Streptococcus salivarius strain HSISS4	53.77	97.756	0.526