Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V471_RS02105 Genome accession   NZ_CP015283
Coordinates   430806..431516 (+) Length   236 a.a.
NCBI ID   WP_084871064.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 425806..436516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS02095 (V471_02100) treC 426981..428606 (-) 1626 WP_084871062.1 alpha,alpha-phosphotrehalase -
  V471_RS02100 (V471_02105) treP 428670..430649 (-) 1980 WP_084871063.1 PTS system trehalose-specific EIIBC component -
  V471_RS02105 (V471_02110) treR 430806..431516 (+) 711 WP_084871064.1 trehalose operon repressor Regulator
  V471_RS02110 (V471_02115) - 431570..432130 (-) 561 WP_021144703.1 TIGR01440 family protein -
  V471_RS02115 - 432146..432484 (-) 339 WP_073687829.1 hypothetical protein -
  V471_RS02120 (V471_02120) - 432517..432873 (-) 357 WP_002892073.1 hypothetical protein -
  V471_RS02125 (V471_02125) - 433163..434044 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  V471_RS02130 (V471_02130) - 434170..435156 (-) 987 WP_013990094.1 IS30 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27355.99 Da        Isoelectric Point: 6.8431

>NTDB_id=178278 V471_RS02105 WP_084871064.1 430806..431516(+) (treR) [Streptococcus salivarius strain ATCC 25975]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQINLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=178278 V471_RS02105 WP_084871064.1 430806..431516(+) (treR) [Streptococcus salivarius strain ATCC 25975]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAACAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAATGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAACAGCCGACAGGTTTGGCGTGTTGTTCGCCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCAAGCCTTGTTCCTCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGATCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAGGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TTCAATTTACGGAAAGTCGCCATAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.426

99.576

0.602

Multiple sequence alignment