Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE937_RS25760 Genome accession   NZ_CP019020
Coordinates   4486883..4487551 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli strain Ecol_244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4481883..4492551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE937_RS25725 (BE937_26200) yicC 4481902..4482765 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  BE937_RS25735 (BE937_26210) rph 4482892..4483608 (+) 717 WP_001247093.1 ribonuclease PH -
  BE937_RS25740 (BE937_26215) pyrE 4483674..4484315 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BE937_RS25745 (BE937_26220) slmA 4484352..4484948 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  BE937_RS25750 (BE937_26225) dut 4485055..4485513 (-) 459 WP_000976070.1 dUTP diphosphatase -
  BE937_RS25755 (BE937_26230) coaBC 4485491..4486711 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BE937_RS25760 (BE937_26235) radC 4486883..4487551 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  BE937_RS25765 (BE937_26240) rpmB 4487768..4488004 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  BE937_RS25770 (BE937_26245) rpmG 4488025..4488192 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  BE937_RS25775 (BE937_26250) mutM 4488290..4489099 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BE937_RS25780 (BE937_26255) coaD 4489138..4489617 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  BE937_RS25785 (BE937_26260) waaA 4489625..4490902 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BE937_RS25790 (BE937_26265) rfaQ 4491316..4492374 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=178246 BE937_RS25760 WP_001296533.1 4486883..4487551(+) (radC) [Escherichia coli strain Ecol_244]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=178246 BE937_RS25760 WP_001296533.1 4486883..4487551(+) (radC) [Escherichia coli strain Ecol_244]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496