Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NX99_RS04880 Genome accession   NZ_CP015282
Coordinates   1135426..1137204 (-) Length   592 a.a.
NCBI ID   WP_084914980.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130426..1142204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS04850 (NX99_04765) frr 1130512..1131069 (-) 558 WP_084914972.1 ribosome recycling factor -
  NX99_RS04855 (NX99_04770) pyrH 1131084..1131821 (-) 738 WP_002885551.1 UMP kinase -
  NX99_RS04860 (NX99_04775) - 1132058..1133281 (-) 1224 WP_084914974.1 sensor histidine kinase -
  NX99_RS04865 (NX99_04780) - 1133295..1133972 (-) 678 WP_084914975.1 response regulator transcription factor -
  NX99_RS04870 (NX99_04785) - 1133974..1134597 (-) 624 WP_084914977.1 GTP pyrophosphokinase -
  NX99_RS04875 (NX99_04790) - 1134745..1135368 (-) 624 WP_084914979.1 GNAT family N-acetyltransferase -
  NX99_RS04880 (NX99_04795) rcrQ 1135426..1137204 (-) 1779 WP_084914980.1 ABC transporter ATP-binding protein Regulator
  NX99_RS04885 (NX99_04800) rcrP 1137194..1139008 (-) 1815 WP_084914982.1 ABC transporter ATP-binding protein Regulator
  NX99_RS04890 (NX99_04805) rcrR 1139012..1139455 (-) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NX99_RS04895 (NX99_04810) - 1139641..1140051 (-) 411 WP_084914984.1 peptide deformylase -
  NX99_RS04900 (NX99_04815) - 1140209..1141750 (-) 1542 WP_232313530.1 YfhO family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65164.16 Da        Isoelectric Point: 5.1069

>NTDB_id=178211 NX99_RS04880 WP_084914980.1 1135426..1137204(-) (rcrQ) [Streptococcus salivarius strain ATCC 27945]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTYTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=178211 NX99_RS04880 WP_084914980.1 1135426..1137204(-) (rcrQ) [Streptococcus salivarius strain ATCC 27945]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCAGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACTAAAATGGGGACAATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTTGGTTACTTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTTCCTCTTAATTATTTCGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGGTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCTATTATTATGATGTTTTATTCAAATGTTACTATGGCTTTTACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTTTGGTAGCCTTCATCATGGGTTTCTCGCAACCACTTTTCAAGCGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACGGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAAAGTAGTCAAGCTTTCAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTCATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGCGCCATCAAAGTTATTGATGGTAGCTTGACTATTGGAGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACTGCTGAGTTGACATA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAAACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCGGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTCGATACGAATGACATGAAGCGTGAAACTGTTCATGACCA
ATTCTCAATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGACAGAAGCAGCTCTTGACCATTGCACGTGCGCTTCTTAAGGATGCCCC
TCTCCTTATCTTGGATGAGGCGACATCATCTGTCGACACTCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGTACTTCCTTTGTTATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.088

100

0.691

Multiple sequence alignment