Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NX99_RS04780 Genome accession   NZ_CP015282
Coordinates   1112168..1113973 (-) Length   601 a.a.
NCBI ID   WP_014633984.1    Uniprot ID   A0A1V0GB58
Organism   Streptococcus salivarius strain ATCC 27945     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107168..1118973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS04760 (NX99_04675) - 1107929..1108414 (-) 486 WP_084914959.1 LURP-one-related/scramblase family protein -
  NX99_RS04765 (NX99_04680) - 1108753..1109895 (-) 1143 WP_037611991.1 peptidyl-prolyl cis-trans isomerase -
  NX99_RS04770 (NX99_04685) - 1109957..1110664 (-) 708 WP_014633986.1 O-methyltransferase -
  NX99_RS04775 (NX99_04690) - 1110736..1111956 (-) 1221 WP_048676292.1 OFA family MFS transporter -
  NX99_RS04780 (NX99_04695) pepF 1112168..1113973 (-) 1806 WP_014633984.1 oligoendopeptidase F Regulator
  NX99_RS04785 (NX99_04700) - 1113984..1114943 (-) 960 WP_084914961.1 competence protein CoiA -
  NX99_RS04790 (NX99_04705) - 1116244..1118181 (-) 1938 WP_084914962.1 GbpC/Spa domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69084.09 Da        Isoelectric Point: 4.5414

>NTDB_id=178210 NX99_RS04780 WP_014633984.1 1112168..1113973(-) (pepF) [Streptococcus salivarius strain ATCC 27945]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEDLVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=178210 NX99_RS04780 WP_014633984.1 1112168..1113973(-) (pepF) [Streptococcus salivarius strain ATCC 27945]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGTCTCATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAATTCAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCAGCAGCA
GGTGATATCTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
CCAAGGGGATGTGGTTGAGTTGACGCATGGTAACTTTATCACTCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACTTACGAGCAGTTTCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAGAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGATGAGCTTAAGATGTATGACGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCCTACTCAGGTGGTGCTTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAACCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCAGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTGCTTAAAGAGGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCCGAGTTTGAACATGCTATCCATGAGGCAGATGCATCTGGTCAAATCTTGACAGCGGACTTC
ATGAATAAGCTTTACGCAGACCTCAATGAGAAATACTATAACCTCAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATATGCTACAGGGTTTGCGGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCATGGTACTGAAGAAGATAAGGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGACTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GB58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.501

100

0.995

Multiple sequence alignment