Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE937_RS09355 Genome accession   NZ_CP019020
Coordinates   1341669..1342145 (-) Length   158 a.a.
NCBI ID   WP_078235017.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1336669..1347145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE937_RS09310 (BE937_09560) sbmC 1337161..1337634 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  BE937_RS09315 (BE937_09565) yeeA 1337832..1338890 (+) 1059 WP_001200890.1 FUSC family protein -
  BE937_RS09320 (BE937_09570) tmaR 1339062..1339391 (+) 330 WP_000450409.1 DUF496 family protein -
  BE937_RS09325 (BE937_09575) - 1339492..1339674 (-) 183 WP_061157913.1 EutP/PduV family microcompartment system protein -
  BE937_RS09330 (BE937_09580) - 1339728..1339874 (+) 147 Protein_1224 transposase domain-containing protein -
  BE937_RS28135 (BE937_09585) - 1340163..1340243 (-) 81 Protein_1225 hypothetical protein -
  BE937_RS09335 (BE937_09590) yeeW 1340289..1340483 (-) 195 WP_000988601.1 DUF5983 family protein -
  BE937_RS09340 (BE937_09595) cbtA 1340480..1340854 (-) 375 WP_061157912.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BE937_RS09345 (BE937_09600) cbeA 1340943..1341311 (-) 369 WP_001535568.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BE937_RS09350 (BE937_09605) yeeT 1341385..1341606 (-) 222 WP_061157911.1 DUF987 domain-containing protein -
  BE937_RS09355 (BE937_09610) radC 1341669..1342145 (-) 477 WP_078235017.1 RadC family protein Machinery gene
  BE937_RS09360 (BE937_09615) - 1342161..1342640 (-) 480 WP_061157910.1 antirestriction protein -
  BE937_RS09365 (BE937_09625) - 1342903..1343724 (-) 822 WP_001234571.1 DUF932 domain-containing protein -
  BE937_RS09375 (BE937_09630) - 1343945..1344355 (-) 411 WP_061157909.1 hypothetical protein -
  BE937_RS09380 (BE937_09635) - 1344371..1345048 (-) 678 WP_001362823.1 hypothetical protein -
  BE937_RS09385 (BE937_09640) - 1345184..1346254 (-) 1071 WP_061157908.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17760.40 Da        Isoelectric Point: 7.6152

>NTDB_id=178193 BE937_RS09355 WP_078235017.1 1341669..1342145(-) (radC) [Escherichia coli strain Ecol_244]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQAPGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=178193 BE937_RS09355 WP_078235017.1 1341669..1342145(-) (radC) [Escherichia coli strain Ecol_244]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACCGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392