Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BE937_RS09300 Genome accession   NZ_CP019020
Coordinates   1334240..1335667 (-) Length   475 a.a.
NCBI ID   WP_000980551.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_244     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329240..1340667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE937_RS09270 (BE937_09520) hisL 1329824..1329874 (-) 51 WP_001364200.1 his operon leader peptide -
  BE937_RS09275 (BE937_09525) yefM 1330157..1330408 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  BE937_RS09280 (BE937_09530) yoeB 1330405..1330659 (+) 255 WP_024705227.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  BE937_RS09285 (BE937_09535) yeeZ 1330742..1331566 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BE937_RS09290 (BE937_09540) yeeY 1331612..1332541 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BE937_RS28130 yoeI 1332756..1332818 (+) 63 WP_010723108.1 membrane protein YoeI -
  BE937_RS09295 (BE937_09545) plaP 1332808..1334166 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  BE937_RS09300 (BE937_09550) sbcB 1334240..1335667 (-) 1428 WP_000980551.1 exodeoxyribonuclease I Machinery gene
  BE937_RS09305 (BE937_09555) dacD 1335876..1337042 (+) 1167 WP_061157914.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BE937_RS09310 (BE937_09560) sbmC 1337161..1337634 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  BE937_RS09315 (BE937_09565) yeeA 1337832..1338890 (+) 1059 WP_001200890.1 FUSC family protein -
  BE937_RS09320 (BE937_09570) tmaR 1339062..1339391 (+) 330 WP_000450409.1 DUF496 family protein -
  BE937_RS09325 (BE937_09575) - 1339492..1339674 (-) 183 WP_061157913.1 EutP/PduV family microcompartment system protein -
  BE937_RS09330 (BE937_09580) - 1339728..1339874 (+) 147 Protein_1224 transposase domain-containing protein -
  BE937_RS28135 (BE937_09585) - 1340163..1340243 (-) 81 Protein_1225 hypothetical protein -
  BE937_RS09335 (BE937_09590) yeeW 1340289..1340483 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.77 Da        Isoelectric Point: 5.3476

>NTDB_id=178192 BE937_RS09300 WP_000980551.1 1334240..1335667(-) (sbcB) [Escherichia coli strain Ecol_244]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDD
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=178192 BE937_RS09300 WP_000980551.1 1334240..1335667(-) (sbcB) [Escherichia coli strain Ecol_244]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGAT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATAAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCTGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-191)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment