Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE937_RS04405 Genome accession   NZ_CP019020
Coordinates   311334..311810 (-) Length   158 a.a.
NCBI ID   WP_078234972.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 306334..316810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE937_RS04365 (BE937_04510) - 307726..307896 (-) 171 Protein_295 IS110 family transposase -
  BE937_RS04370 (BE937_04515) - 308238..309073 (-) 836 Protein_296 DUF4942 domain-containing protein -
  BE937_RS04375 (BE937_04520) - 309158..309340 (-) 183 WP_078235160.1 DUF957 domain-containing protein -
  BE937_RS28500 (BE937_04525) - 309283..309507 (-) 225 Protein_298 DUF5983 family protein -
  BE937_RS04385 (BE937_04530) - 309504..309880 (-) 377 Protein_299 TA system toxin CbtA family protein -
  BE937_RS04390 (BE937_04535) - 309969..310337 (-) 369 WP_012908802.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE937_RS04395 (BE937_04540) - 310387..311031 (-) 645 WP_078234971.1 antitoxin of toxin-antitoxin stability system -
  BE937_RS04400 (BE937_04545) - 311050..311271 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  BE937_RS04405 (BE937_04550) radC 311334..311810 (-) 477 WP_078234972.1 RadC family protein Machinery gene
  BE937_RS04410 (BE937_04555) - 311825..312298 (-) 474 WP_078234973.1 antirestriction protein -
  BE937_RS04415 (BE937_04560) - 312392..312637 (-) 246 WP_001518015.1 hypothetical protein -
  BE937_RS04420 (BE937_04565) - 312637..313455 (-) 819 WP_078234974.1 DUF932 domain-containing protein -
  BE937_RS04430 (BE937_04575) - 313555..313788 (-) 234 WP_078234976.1 DUF905 family protein -
  BE937_RS04435 (BE937_04580) - 313867..314322 (-) 456 Protein_308 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17633.26 Da        Isoelectric Point: 6.9860

>NTDB_id=178175 BE937_RS04405 WP_078234972.1 311334..311810(-) (radC) [Escherichia coli strain Ecol_244]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFQVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=178175 BE937_RS04405 WP_078234972.1 311334..311810(-) (radC) [Escherichia coli strain Ecol_244]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCAGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAGGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGGCTTATTACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGACATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38